Variant report

Variant	rs73532454
Chromosome Location	chr15:92507645-92507646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92501600..92503533-chr15:92506006..92508030,3	MCF-7	breast:
2	chr15:92495489..92497057-chr15:92505044..92507956,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55767332	1.00[EUR][1000 genomes]
rs57312242	1.00[EUR][1000 genomes]
rs59863085	1.00[EUR][1000 genomes]
rs61191040	1.00[EUR][1000 genomes]
rs73532450	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92500200-92509600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:92500800-92508600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:92500800-92508800	Weak transcription	Ovary	ovary
5	chr15:92504800-92507800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:92504800-92508200	Weak transcription	Brain Substantia Nigra	brain
7	chr15:92505000-92508000	Weak transcription	A549	lung
8	chr15:92505200-92508200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr15:92506000-92507800	Weak transcription	Esophagus	oesophagus
10	chr15:92506000-92507800	Weak transcription	Left Ventricle	heart
11	chr15:92506000-92508000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr15:92506000-92508000	Weak transcription	Brain Angular Gyrus	brain
13	chr15:92506000-92508000	Weak transcription	Spleen	Spleen
14	chr15:92506000-92508800	Weak transcription	Lung	lung
15	chr15:92506000-92509000	Weak transcription	Placenta	Placenta
16	chr15:92506000-92513600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr15:92506000-92517600	Weak transcription	Colonic Mucosa	Colon
18	chr15:92506200-92507800	Weak transcription	Aorta	Aorta
19	chr15:92506200-92507800	Weak transcription	Right Atrium	heart
20	chr15:92506200-92508200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:92506400-92508000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr15:92506400-92508400	Weak transcription	Adipose Nuclei	Adipose
23	chr15:92506400-92508600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr15:92506600-92507800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr15:92507200-92508200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:92507200-92508400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:92507200-92508400	Enhancers	NHEK	skin
28	chr15:92507200-92509000	Enhancers	HMEC	breast
29	chr15:92507400-92508400	Enhancers	Hela-S3	cervix
30	chr15:92507400-92509200	Enhancers	Brain Hippocampus Middle	brain
31	chr15:92507600-92507800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:92507600-92508400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr15:92507600-92510200	Enhancers	Right Ventricle	heart
34	chr15:92507600-92510400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:92507600-92512200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr15:92507600-92514400	Enhancers	Fetal Heart	heart
37	chr15:92507600-92516400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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