Variant report
| Variant | rs73532569 |
|---|---|
| Chromosome Location | chr6:121309111-121309112 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12525518 | 0.93[AFR][1000 genomes] |
| rs17082913 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6901722 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7753698 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9482101 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9482102 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9482103 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9482104 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9490084 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9490085 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9490086 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9490087 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9490088 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9490089 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9490091 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9490092 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9490102 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9490103 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9490104 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9490115 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023384 | chr6:121235867-121683448 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv886591 | chr6:121260089-121398535 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv886592 | chr6:121260089-121425387 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv464037 | chr6:121261915-121400981 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv604571 | chr6:121261915-121400981 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv530527 | chr6:121298528-121789855 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:121308800-121311200 | Weak transcription | Pancreas | Pancrea |
