Variant report

Variant	rs73532927
Chromosome Location	chr11:72624208-72624209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60288681	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60627587	1.00[AFR][1000 genomes]
rs60718050	1.00[AMR][1000 genomes]
rs7108924	1.00[AMR][1000 genomes]
rs73534926	1.00[AMR][1000 genomes]
rs73545310	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72577200-72651600	Weak transcription	Gastric	stomach
2	chr11:72597200-72634200	Weak transcription	NHLF	lung
3	chr11:72599400-72632400	Weak transcription	HUVEC	blood vessel
4	chr11:72600800-72632600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:72600800-72653200	Weak transcription	Lung	lung
6	chr11:72601000-72636800	Weak transcription	Spleen	Spleen
7	chr11:72601000-72641200	Weak transcription	HSMMtube	muscle
8	chr11:72601200-72636000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:72601400-72632400	Weak transcription	Ovary	ovary
10	chr11:72601800-72636000	Weak transcription	Osteobl	bone
11	chr11:72602200-72636800	Weak transcription	Left Ventricle	heart
12	chr11:72607000-72643000	Weak transcription	HSMM	muscle
13	chr11:72612400-72649000	Weak transcription	Aorta	Aorta
14	chr11:72614200-72640400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:72615800-72631400	Weak transcription	Liver	Liver
16	chr11:72618400-72636000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr11:72619600-72641400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:72620200-72636800	Weak transcription	Right Atrium	heart
19	chr11:72621000-72651000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:72621600-72627200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:72622000-72624800	ZNF genes & repeats	GM12878-XiMat	blood
22	chr11:72622000-72625000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
23	chr11:72622200-72625000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
24	chr11:72622200-72625800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
25	chr11:72622400-72627000	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr11:72622600-72624800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:72622600-72627200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr11:72623200-72624400	ZNF genes & repeats	HepG2	liver
29	chr11:72623200-72624600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
30	chr11:72623600-72624400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
31	chr11:72623600-72624400	ZNF genes & repeats	Dnd41	blood
32	chr11:72623600-72624600	ZNF genes & repeats	Primary T cells from cord blood	blood
33	chr11:72623600-72624600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
34	chr11:72623600-72624600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
35	chr11:72623600-72624600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:72623600-72624800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
37	chr11:72623600-72626200	Weak transcription	Fetal Heart	heart
38	chr11:72623600-72632000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:72623600-72643400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:72623800-72624600	ZNF genes & repeats	Brain Hippocampus Middle	brain
41	chr11:72623800-72624800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
42	chr11:72623800-72624800	ZNF genes & repeats	Fetal Intestine Small	intestine
43	chr11:72623800-72636800	Weak transcription	Psoas Muscle	Psoas
44	chr11:72624000-72624600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:72624000-72624600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:72624000-72624600	ZNF genes & repeats	Thymus	Thymus
47	chr11:72624000-72632000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:72624200-72624600	ZNF genes & repeats	Fetal Muscle Leg	muscle
49	chr11:72624200-72631800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:72624200-72654400	Weak transcription	Duodenum Mucosa	Duodenum

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