Variant report

Variant	rs73534897
Chromosome Location	chr9:97977435-97977436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16912035	0.83[AMR][1000 genomes]
rs73530456	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
2	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97962000-97980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:97963000-97993400	Weak transcription	Hela-S3	cervix
3	chr9:97969800-97981200	Weak transcription	Fetal Stomach	stomach
4	chr9:97969800-97986400	Weak transcription	Fetal Intestine Small	intestine
5	chr9:97970000-97978200	Weak transcription	HepG2	liver
6	chr9:97970200-97980800	Weak transcription	Fetal Intestine Large	intestine
7	chr9:97972000-97980800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:97972400-97977600	Weak transcription	Primary T cells from cord blood	blood
9	chr9:97973600-98024000	Weak transcription	Gastric	stomach
10	chr9:97973800-97977800	Weak transcription	Psoas Muscle	Psoas
11	chr9:97973800-97981200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr9:97974000-98009400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:97975200-97980400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:97975400-97984000	Weak transcription	Fetal Lung	lung
15	chr9:97976000-97978800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr9:97976400-97978000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:97976400-97978200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr9:97976800-97977800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr9:97976800-97978000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr9:97976800-97978000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr9:97976800-97978000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr9:97976800-97978000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:97976800-97978200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr9:97977000-97977600	Weak transcription	K562	blood
25	chr9:97977000-97981000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr9:97977200-97981000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:97977400-97978000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr9:97977400-97978200	Enhancers	GM12878-XiMat	blood

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