Variant report

Variant	rs73536621
Chromosome Location	chr11:73363873-73363874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73536609	1.00[AFR][1000 genomes]
rs73536630	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv525173	chr11:73356872-73364673	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv521125	chr11:73359236-73378142	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv528592	chr11:73360888-73364673	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73357200-73364000	Weak transcription	Liver	Liver
2	chr11:73357800-73364200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:73359000-73371600	Weak transcription	Fetal Brain Female	brain
4	chr11:73359000-73371600	Weak transcription	Right Ventricle	heart
5	chr11:73359200-73367200	Weak transcription	Spleen	Spleen
6	chr11:73359200-73371600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:73359200-73371600	Weak transcription	Thymus	Thymus
8	chr11:73359200-73371800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:73359400-73367000	Weak transcription	Lung	lung
10	chr11:73359400-73371800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr11:73359600-73372200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:73359800-73371800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:73359800-73371800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:73361400-73367800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr11:73361600-73364600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:73361600-73365800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:73361800-73369200	Strong transcription	Primary T cells from cord blood	blood
18	chr11:73362000-73375000	Weak transcription	Aorta	Aorta
19	chr11:73362200-73364000	Enhancers	Fetal Intestine Small	intestine
20	chr11:73362400-73364200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:73362400-73365000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:73362400-73366600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:73362600-73364000	Enhancers	Pancreas	Pancrea
24	chr11:73362600-73364400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:73362600-73364400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:73362600-73364400	Enhancers	HMEC	breast
27	chr11:73362800-73364000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:73362800-73364000	Flanking Active TSS	Brain Substantia Nigra	brain
29	chr11:73362800-73364200	Flanking Active TSS	HepG2	liver
30	chr11:73362800-73364400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:73362800-73364400	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr11:73362800-73366600	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:73362800-73367600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:73363000-73364000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:73363000-73364000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr11:73363000-73364400	Enhancers	Fetal Muscle Leg	muscle
37	chr11:73363000-73365000	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr11:73363200-73364000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr11:73363200-73364000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:73363200-73364000	Enhancers	HUVEC	blood vessel
41	chr11:73363200-73364200	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr11:73363200-73364600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:73363400-73364400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr11:73363400-73364600	Enhancers	Stomach Mucosa	stomach
45	chr11:73363400-73370400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr11:73363400-73371600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:73363600-73364000	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr11:73363600-73364800	Weak transcription	Right Atrium	heart
49	chr11:73363600-73370400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:73363600-73371800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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