Variant report

Variant	rs73536992
Chromosome Location	chr11:72935656-72935657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72931397..72935797-chr11:72938459..72941401,4	K562	blood:
2	chr11:72503643..72506382-chr11:72935261..72937531,2	MCF-7	breast:
3	chr11:72935321..72937353-chr11:73087469..73089491,2	K562	blood:

Variant related genes	Relation type
ENSG00000186635	Chromatin interaction
ENSG00000214530	Chromatin interaction
ENSG00000054967	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73536987	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
3	nsv1038032	chr11:72925347-72966442	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv518659	chr11:72934619-72946020	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72930000-72938400	Weak transcription	Gastric	stomach
2	chr11:72930000-72938400	Weak transcription	Pancreas	Pancrea
3	chr11:72930600-72938800	Weak transcription	A549	lung
4	chr11:72930600-72944200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:72931000-72938400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:72931200-72935800	Enhancers	Right Ventricle	heart
7	chr11:72931200-72938600	Weak transcription	Colonic Mucosa	Colon
8	chr11:72931400-72936000	Enhancers	Dnd41	blood
9	chr11:72932000-72936000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:72932400-72936200	Weak transcription	Right Atrium	heart
11	chr11:72932600-72936600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:72932800-72936200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
13	chr11:72932800-72936600	Genic enhancers	Monocytes-CD14+_RO01746	blood
14	chr11:72932800-72937000	Weak transcription	HMEC	breast
15	chr11:72932800-72937200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:72932800-72937600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:72933000-72938600	Weak transcription	Fetal Intestine Large	intestine
18	chr11:72933600-72935800	Strong transcription	Esophagus	oesophagus
19	chr11:72933600-72938600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:72934200-72936400	Genic enhancers	Primary monocytes fromperipheralblood	blood
21	chr11:72934400-72935800	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr11:72934400-72936400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr11:72934400-72936400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:72934400-72941600	Enhancers	Placenta	Placenta
25	chr11:72934600-72935800	Genic enhancers	Spleen	Spleen
26	chr11:72934600-72936800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:72934600-72938600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr11:72934600-72941600	Enhancers	Placenta Amnion	Placenta Amnion
29	chr11:72934800-72936200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:72934800-72939800	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr11:72935000-72936000	Weak transcription	Left Ventricle	heart
32	chr11:72935000-72936200	Enhancers	Primary hematopoietic stem cells	blood
33	chr11:72935000-72936600	Enhancers	Psoas Muscle	Psoas
34	chr11:72935200-72937200	Enhancers	Lung	lung
35	chr11:72935400-72936000	Weak transcription	Fetal Intestine Small	intestine
36	chr11:72935400-72938600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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