Variant report

Variant	rs73537939
Chromosome Location	chr11:87153320-87153321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10501637	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11603481	0.94[EUR][1000 genomes]
rs61590696	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7108842	0.90[EUR][1000 genomes]
rs7113573	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114494	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7118002	1.00[EUR][1000 genomes]
rs7118472	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7118684	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7118685	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7118964	1.00[EUR][1000 genomes]
rs7121872	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7122517	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73537957	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73537967	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87143800-87155800	Weak transcription	Adipose Nuclei	Adipose
2	chr11:87148400-87157600	Enhancers	NHDF-Ad	bronchial
3	chr11:87149600-87155400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:87149600-87162000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:87149800-87155400	Weak transcription	NH-A	brain
6	chr11:87149800-87155600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:87151600-87165200	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:87152000-87153800	Weak transcription	Fetal Heart	heart
9	chr11:87152000-87154200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:87152000-87154800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:87152000-87155000	Weak transcription	Osteobl	bone
12	chr11:87152000-87155600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:87152200-87155200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:87152200-87156200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:87152400-87154000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:87152400-87155400	Weak transcription	HSMMtube	muscle
17	chr11:87152600-87155400	Weak transcription	HSMM	muscle
18	chr11:87152800-87154000	Weak transcription	NHLF	lung
19	chr11:87153000-87155200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links