Variant report

Variant	rs73540181
Chromosome Location	chr9:98207059-98207060
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98197509..98199344-chr9:98205458..98207531,2	MCF-7	breast:
2	chr9:98206913..98208735-chr9:98254383..98256847,2	MCF-7	breast:
3	chr9:98195671..98199206-chr9:98203414..98207469,4	K562	blood:
4	chr9:98202595..98206584-chr9:98206995..98209232,3	MCF-7	breast:
5	chr9:98200946..98203462-chr9:98205677..98208531,4	K562	blood:

Variant related genes	Relation type
ENSG00000185920	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16909883	1.00[AMR][1000 genomes]
rs2066831	1.00[AMR][1000 genomes]
rs2066832	1.00[AMR][1000 genomes]
rs58490443	1.00[AMR][1000 genomes]
rs73540175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv949520	chr9:98204199-98238358	Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98189600-98210800	Weak transcription	Right Atrium	heart
2	chr9:98197000-98207200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:98197200-98207200	Weak transcription	Placenta	Placenta
4	chr9:98197200-98207600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:98197200-98208800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:98197800-98209400	Weak transcription	Fetal Heart	heart
7	chr9:98198000-98207200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr9:98198000-98207200	Weak transcription	Brain Substantia Nigra	brain
9	chr9:98198000-98207400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:98200600-98207200	Weak transcription	HepG2	liver
11	chr9:98200800-98211800	Weak transcription	Fetal Brain Male	brain
12	chr9:98202000-98224600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:98202800-98207800	Weak transcription	Hela-S3	cervix
14	chr9:98203000-98207200	Weak transcription	HSMM	muscle
15	chr9:98203200-98207200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr9:98203200-98207200	Weak transcription	Fetal Kidney	kidney
17	chr9:98203200-98207200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:98203200-98207600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:98203200-98208800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:98203400-98208600	Weak transcription	Colonic Mucosa	Colon
21	chr9:98203600-98207200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:98203600-98207600	Weak transcription	Brain Angular Gyrus	brain
23	chr9:98203600-98211200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr9:98204400-98208400	Weak transcription	Spleen	Spleen
25	chr9:98204400-98209600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:98204400-98220400	Strong transcription	Fetal Intestine Large	intestine
27	chr9:98204600-98207200	Weak transcription	HSMMtube	muscle
28	chr9:98204600-98209000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:98204600-98209800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:98204600-98212800	Strong transcription	Fetal Lung	lung
31	chr9:98204600-98214400	Weak transcription	Osteobl	bone
32	chr9:98204800-98224400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:98205000-98209600	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:98205000-98210000	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr9:98205200-98207600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr9:98205200-98209000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr9:98205200-98218000	Weak transcription	Small Intestine	intestine
38	chr9:98205400-98207200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:98205400-98207200	Weak transcription	NH-A	brain
40	chr9:98205400-98208400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr9:98205400-98208800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr9:98205600-98207400	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr9:98205600-98207400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr9:98205600-98207600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr9:98205600-98207600	Weak transcription	A549	lung
46	chr9:98205600-98208600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr9:98205600-98212600	Weak transcription	Colon Smooth Muscle	Colon
48	chr9:98205800-98207600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr9:98206000-98210800	Weak transcription	K562	blood
50	chr9:98206000-98216000	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links