Variant report

Variant	rs73541565
Chromosome Location	chr19:39480988-39480989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39480024..39481800-chr19:39521325..39523355,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161243	Chromatin interaction

rs_ID	r²[population]
rs17880870	1.00[AMR][1000 genomes]
rs17881574	1.00[AMR][1000 genomes]
rs17883178	1.00[AMR][1000 genomes]
rs56935544	1.00[AMR][1000 genomes]
rs57556122	1.00[AMR][1000 genomes]
rs58109066	1.00[AMR][1000 genomes]
rs59087858	1.00[AMR][1000 genomes]
rs73543539	1.00[AMR][1000 genomes]
rs73930274	1.00[AMR][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39479000-39483200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr19:39479400-39481000	Enhancers	Fetal Heart	heart
3	chr19:39479600-39481000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr19:39479600-39481000	Enhancers	Fetal Muscle Leg	muscle
5	chr19:39479600-39482800	Enhancers	Placenta	Placenta
6	chr19:39479800-39481800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr19:39480000-39481600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr19:39480000-39481600	Enhancers	Fetal Muscle Trunk	muscle
9	chr19:39480000-39481600	Weak transcription	Osteobl	bone
10	chr19:39480000-39483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr19:39480200-39481600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr19:39480200-39481600	Weak transcription	Adipose Nuclei	Adipose
14	chr19:39480200-39481600	Weak transcription	A549	lung
15	chr19:39480200-39481600	Weak transcription	HMEC	breast
16	chr19:39480200-39481600	Weak transcription	NHDF-Ad	bronchial
17	chr19:39480200-39481800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr19:39480200-39481800	Weak transcription	Hela-S3	cervix
19	chr19:39480200-39481800	Weak transcription	HSMM	muscle
20	chr19:39480200-39483800	Weak transcription	HSMMtube	muscle
21	chr19:39480200-39486600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr19:39480400-39481600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr19:39480800-39481800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr19:39480800-39482600	Bivalent Enhancer	HepG2	liver

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