Variant report
| Variant | rs73542769 |
|---|---|
| Chromosome Location | chr15:92286795-92286796 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-VPS33B-7 | chr15:92286071-92287185 | NONHSAT048507 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11853241 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11854843 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11854868 | 0.87[EUR][1000 genomes] |
| rs11855064 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11856720 | 0.86[EUR][1000 genomes] |
| rs11858519 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11858521 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs56660880 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs57111338 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs57503935 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57803463 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs58136277 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs58414308 | 0.84[EUR][1000 genomes] |
| rs60612617 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60997755 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs61552469 | 0.84[EUR][1000 genomes] |
| rs61662853 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7178521 | 0.87[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs73524504 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73542773 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs8024919 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048635 | chr15:92073294-92557339 | Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv570449 | chr15:92237795-92334756 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1052053 | chr15:92274797-92295314 | Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:92280200-92292800 | Weak transcription | Pancreas | Pancrea |
| 2 | chr15:92282200-92288400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
