Variant report

Variant	rs73543911
Chromosome Location	chr9:116883074-116883075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116880563..116882145-chr9:116882823..116884910,2	MCF-7	breast:
2	chr9:116867846..116870014-chr9:116881182..116883188,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12115652	1.00[AMR][1000 genomes]
rs12115691	1.00[AMR][1000 genomes]
rs1249754	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	esv2422396	chr9:116792944-117354862	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
3	esv2422492	chr9:116811294-117366643	Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
4	esv2761285	chr9:116811897-117103268	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
5	nsv870215	chr9:116842614-117070344	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	124 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116879000-116883800	Weak transcription	Lung	lung
2	chr9:116879200-116886200	Weak transcription	Right Atrium	heart
3	chr9:116879400-116885000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:116879600-116885400	Enhancers	Fetal Lung	lung
5	chr9:116879600-116888600	Enhancers	Stomach Mucosa	stomach
6	chr9:116880200-116884400	Enhancers	Fetal Intestine Large	intestine
7	chr9:116880200-116884600	Enhancers	Fetal Intestine Small	intestine
8	chr9:116881200-116884600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:116881200-116886400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:116881200-116886600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:116881200-116886600	Weak transcription	Right Ventricle	heart
12	chr9:116881600-116885600	Weak transcription	Fetal Heart	heart
13	chr9:116881800-116886400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:116882000-116886200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:116882000-116888000	Weak transcription	Spleen	Spleen
16	chr9:116882400-116885800	Enhancers	HepG2	liver
17	chr9:116882600-116885600	Weak transcription	Liver	Liver
18	chr9:116882600-116886200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:116882800-116883600	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:116882800-116885400	Weak transcription	Pancreas	Pancrea
21	chr9:116882800-116889200	Weak transcription	Gastric	stomach
22	chr9:116883000-116885000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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