Variant report

Variant	rs73545027
Chromosome Location	chr13:96155751-96155752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1033953	0.93[ASN][1000 genomes]
rs10508025	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11839820	0.93[ASN][1000 genomes]
rs11840079	0.93[ASN][1000 genomes]
rs11840119	0.93[ASN][1000 genomes]
rs11842455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12853585	0.93[ASN][1000 genomes]
rs12853600	0.93[ASN][1000 genomes]
rs12858942	0.93[ASN][1000 genomes]
rs12865002	0.93[ASN][1000 genomes]
rs12866182	0.93[ASN][1000 genomes]
rs12868251	0.93[ASN][1000 genomes]
rs12868940	0.93[ASN][1000 genomes]
rs12877076	0.93[ASN][1000 genomes]
rs1318817	0.93[ASN][1000 genomes]
rs16880	0.93[ASN][1000 genomes]
rs2148046	0.93[ASN][1000 genomes]
rs2148047	0.93[ASN][1000 genomes]
rs2389313	0.93[ASN][1000 genomes]
rs28539489	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2892733	0.81[ASN][1000 genomes]
rs34238981	0.93[ASN][1000 genomes]
rs34451357	0.93[ASN][1000 genomes]
rs34472875	0.93[ASN][1000 genomes]
rs34485920	0.86[ASN][1000 genomes]
rs34743079	0.93[ASN][1000 genomes]
rs34907341	0.93[ASN][1000 genomes]
rs35107945	0.93[ASN][1000 genomes]
rs35118150	0.93[ASN][1000 genomes]
rs35139994	0.93[ASN][1000 genomes]
rs35201733	0.93[ASN][1000 genomes]
rs35227895	0.93[ASN][1000 genomes]
rs35376529	0.93[ASN][1000 genomes]
rs35442761	0.93[ASN][1000 genomes]
rs35458901	0.93[ASN][1000 genomes]
rs35509467	0.93[ASN][1000 genomes]
rs35521009	0.93[ASN][1000 genomes]
rs35556246	0.93[ASN][1000 genomes]
rs35679876	0.93[ASN][1000 genomes]
rs35750325	0.93[ASN][1000 genomes]
rs35859073	0.93[ASN][1000 genomes]
rs35921212	0.93[ASN][1000 genomes]
rs36034774	0.93[ASN][1000 genomes]
rs4344600	0.93[ASN][1000 genomes]
rs4375536	0.93[ASN][1000 genomes]
rs4448802	0.93[ASN][1000 genomes]
rs4509883	0.81[ASN][1000 genomes]
rs4558269	0.93[ASN][1000 genomes]
rs4635199	0.93[ASN][1000 genomes]
rs56896735	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57371671	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492806	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71433025	0.93[ASN][1000 genomes]
rs71433026	0.93[ASN][1000 genomes]
rs71433087	0.93[ASN][1000 genomes]
rs71433088	0.93[ASN][1000 genomes]
rs7334779	0.93[ASN][1000 genomes]
rs7336459	0.93[ASN][1000 genomes]
rs7336934	0.93[ASN][1000 genomes]
rs73545003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545006	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545039	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545043	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7981253	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988162	1.00[ASN][1000 genomes]
rs7989967	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990388	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7993626	0.93[ASN][1000 genomes]
rs8000535	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927789	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524997	0.93[ASN][1000 genomes]
rs9525002	0.93[ASN][1000 genomes]
rs9561891	0.93[ASN][1000 genomes]
rs9669864	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9670620	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971305	0.93[ASN][1000 genomes]
rs971306	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752652	chr13:96059024-96181597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96150600-96157800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:96150600-96166800	Weak transcription	Pancreas	Pancrea
3	chr13:96150600-96167800	Weak transcription	Esophagus	oesophagus
4	chr13:96153000-96157400	Weak transcription	HMEC	breast
5	chr13:96153000-96157600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:96153600-96157400	Weak transcription	Brain Substantia Nigra	brain
7	chr13:96155000-96157400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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