Variant report

Variant	rs73545730
Chromosome Location	chr16:46923765-46923766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:46721433..46723160-chr16:46922380..46924051,2	K562	blood:
2	chr16:46917956..46920289-chr16:46920497..46924419,3	K562	blood:
3	chr16:46923713..46925987-chr16:46943511..46946070,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166123	Chromatin interaction
ENSG00000069329	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60622598	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534965	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059456	chr16:46463770-47307580	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1066115	chr16:46463770-47318415	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv1066048	chr16:46500740-46998694	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv542908	chr16:46500740-46998694	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv1059147	chr16:46500740-47010960	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv542909	chr16:46500740-47010960	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv1060982	chr16:46721805-46938858	Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
8	esv3519767	chr16:46873184-46960035	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv3519768	chr16:46873184-46960035	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv1831215	chr16:46907546-46962858	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	esv1799095	chr16:46916670-46972671	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46919000-46945400	Weak transcription	Aorta	Aorta
2	chr16:46919000-46963400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:46919200-46927600	Weak transcription	Ovary	ovary
4	chr16:46919200-46931600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr16:46919200-46933200	Weak transcription	HUVEC	blood vessel
6	chr16:46919200-46934400	Weak transcription	Lung	lung
7	chr16:46919400-46927800	Weak transcription	Colon Smooth Muscle	Colon
8	chr16:46919400-46931600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr16:46919600-46923800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr16:46919600-46929800	Weak transcription	Right Atrium	heart
11	chr16:46919600-46931400	Weak transcription	Spleen	Spleen
12	chr16:46919600-46934200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr16:46919800-46927600	Weak transcription	Right Ventricle	heart
14	chr16:46920000-46931800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr16:46920200-46927600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr16:46920200-46944800	Weak transcription	Hela-S3	cervix
17	chr16:46920400-46928000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr16:46920400-46928000	Weak transcription	HSMMtube	muscle
19	chr16:46920400-46928800	Weak transcription	Osteobl	bone
20	chr16:46920600-46929600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr16:46920600-46933000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr16:46920800-46924600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr16:46920800-46925400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr16:46920800-46927600	Weak transcription	Placenta	Placenta
25	chr16:46920800-46928000	Weak transcription	Fetal Kidney	kidney
26	chr16:46920800-46929000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr16:46920800-46929400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr16:46920800-46936200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr16:46920800-46940600	Weak transcription	HMEC	breast
30	chr16:46920800-46949000	Weak transcription	A549	lung
31	chr16:46921000-46924000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr16:46921000-46924200	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr16:46921000-46924600	Strong transcription	Fetal Stomach	stomach
34	chr16:46921000-46927800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr16:46921000-46928000	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr16:46921000-46928000	Weak transcription	NH-A	brain
37	chr16:46921000-46928400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr16:46921000-46944400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr16:46921200-46924400	Genic enhancers	NHEK	skin
40	chr16:46921200-46927600	Weak transcription	Fetal Brain Male	brain
41	chr16:46921400-46924800	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr16:46921600-46923800	Strong transcription	Fetal Muscle Trunk	muscle
43	chr16:46921600-46926000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr16:46921800-46924200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr16:46921800-46926800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr16:46921800-46929400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr16:46921800-46941600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr16:46922000-46927600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr16:46922000-46927800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr16:46922200-46924400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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