Variant report

Variant	rs73546056
Chromosome Location	chr6:132678233-132678234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs60251774	1.00[AMR][1000 genomes]
rs73546032	1.00[AMR][1000 genomes]
rs73546044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546061	1.00[AMR][1000 genomes]
rs73546078	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132669600-132678400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:132671200-132678400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:132673800-132683000	Weak transcription	Esophagus	oesophagus
4	chr6:132676400-132678400	Weak transcription	NH-A	brain
5	chr6:132676400-132681800	Weak transcription	Primary T cells from cord blood	blood
6	chr6:132676400-132686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:132676600-132681400	Weak transcription	Fetal Stomach	stomach
8	chr6:132676600-132682000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:132677200-132678400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr6:132677200-132679200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:132677200-132688600	Weak transcription	Osteobl	bone
12	chr6:132677400-132678400	Enhancers	Fetal Kidney	kidney
13	chr6:132677400-132680200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:132677400-132681000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:132677400-132681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:132677400-132701200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:132677600-132679000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:132677600-132679200	Enhancers	Primary B cells from cord blood	blood
19	chr6:132677600-132681200	Weak transcription	Fetal Lung	lung
20	chr6:132678000-132678600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:132678000-132679400	Enhancers	HUVEC	blood vessel
22	chr6:132678200-132678400	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr6:132678200-132678600	Enhancers	Primary hematopoietic stem cells	blood
24	chr6:132678200-132678600	Enhancers	NHEK	skin
25	chr6:132678200-132679400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:132678200-132679600	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links