Variant report

Variant	rs73546828
Chromosome Location	chr6:133825741-133825742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133825578..133828475-chr6:133830630..133833152,2	K562	blood:
2	chr6:133825151..133828230-chr6:133834384..133837130,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238059	Chromatin interaction
ENSG00000227954	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs35516420	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3777867	1.00[AMR][1000 genomes]
rs58305346	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59368621	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544958	0.85[AMR][1000 genomes]
rs73544961	1.00[AMR][1000 genomes]
rs73544963	1.00[AMR][1000 genomes]
rs73544978	1.00[AMR][1000 genomes]
rs73544982	1.00[AMR][1000 genomes]
rs73544985	1.00[AMR][1000 genomes]
rs73546816	1.00[AMR][1000 genomes]
rs73546848	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546865	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546874	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546881	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546883	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7748259	0.94[AFR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133818400-133828400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:133821800-133826600	Enhancers	Adipose Nuclei	Adipose
3	chr6:133821800-133835600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:133822200-133826800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:133822600-133826800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:133822600-133826800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:133822800-133826400	Enhancers	Osteobl	bone
8	chr6:133823000-133826400	Enhancers	Fetal Kidney	kidney
9	chr6:133823200-133869600	Weak transcription	Psoas Muscle	Psoas
10	chr6:133824200-133854200	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:133824400-133837400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:133824400-133854800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:133824400-133861600	Weak transcription	Ovary	ovary
14	chr6:133824600-133825800	Weak transcription	Fetal Lung	lung
15	chr6:133824600-133827000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:133824600-133831000	Weak transcription	A549	lung
17	chr6:133824800-133825800	Weak transcription	NHDF-Ad	bronchial
18	chr6:133824800-133826000	Weak transcription	HSMMtube	muscle
19	chr6:133824800-133826600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:133824800-133832600	Weak transcription	Hela-S3	cervix
21	chr6:133824800-133835800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:133825600-133857200	Weak transcription	Fetal Muscle Trunk	muscle

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