Variant report

Variant	rs73548506
Chromosome Location	chr6:133082823-133082824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133080844..133083243-chr6:133120275..133122727,2	K562	blood:
2	chr6:133054047..133059196-chr6:133082600..133087082,5	MCF-7	breast:
3	chr6:133082471..133084490-chr6:133097635..133100360,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000093134	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11755373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34988221	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3756973	0.82[EUR][1000 genomes]
rs58155972	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59215803	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59436045	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59989552	0.96[EUR][1000 genomes]
rs60574213	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61632110	0.96[EUR][1000 genomes]
rs73548522	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550478	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73554430	0.96[EUR][1000 genomes]
rs998630	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133061400-133098000	Weak transcription	Spleen	Spleen
2	chr6:133064200-133083000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:133065000-133098000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:133068800-133083200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:133069600-133083200	Weak transcription	Thymus	Thymus
6	chr6:133072800-133084400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:133072800-133084800	Weak transcription	Stomach Mucosa	stomach
8	chr6:133073200-133083200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:133075800-133083600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:133078800-133083000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:133079000-133083000	Enhancers	GM12878-XiMat	blood
12	chr6:133079000-133083200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:133079000-133083200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:133079000-133083200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:133079000-133083600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:133079000-133083800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:133079000-133084800	Weak transcription	Liver	Liver
18	chr6:133079000-133085000	Weak transcription	A549	lung
19	chr6:133079400-133083200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:133080000-133083200	Weak transcription	Primary B cells from cord blood	blood
21	chr6:133080200-133083200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:133080400-133085000	Weak transcription	Adipose Nuclei	Adipose
23	chr6:133080400-133085200	Weak transcription	Right Atrium	heart
24	chr6:133081400-133084600	Weak transcription	Fetal Stomach	stomach
25	chr6:133081400-133096800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:133081600-133084400	Weak transcription	Placenta	Placenta
27	chr6:133081800-133083200	Weak transcription	Primary T cells from cord blood	blood
28	chr6:133081800-133083200	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr6:133081800-133086800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:133082000-133083000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr6:133082400-133083600	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr6:133082400-133083800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr6:133082600-133083200	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr6:133082600-133083600	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr6:133082600-133083600	Enhancers	Primary B cells from peripheral blood	blood
36	chr6:133082600-133083600	Enhancers	Primary T cells fromperipheralblood	blood
37	chr6:133082800-133083600	Enhancers	Primary T helper cells fromperipheralblood	blood

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