Variant report

Variant	rs7355042
Chromosome Location	chr1:59041691-59041692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59009849..59013755-chr1:59040870..59045611,9	MCF-7	breast:
2	chr1:59010302..59014215-chr1:59041338..59045361,8	MCF-7	breast:
3	chr1:59039914..59042841-chr1:59125894..59128684,2	MCF-7	breast:
4	chr1:59039784..59042509-chr1:59074910..59077228,3	MCF-7	breast:
5	chr1:59007888..59009563-chr1:59039964..59042756,2	K562	blood:
6	chr1:59003237..59005403-chr1:59039825..59042747,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173406	Chromatin interaction
ENSG00000162600	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2179658	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59038400-59043600	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr1:59040000-59041800	Active TSS	Pancreas	Pancrea
3	chr1:59040000-59042000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:59040000-59042000	Active TSS	Stomach Mucosa	stomach
5	chr1:59040200-59043400	Active TSS	NHEK	skin
6	chr1:59040200-59043600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:59040600-59042000	Bivalent/Poised TSS	Fetal Stomach	stomach
8	chr1:59040800-59043400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:59040800-59043400	Active TSS	Placenta Amnion	Placenta Amnion
10	chr1:59041000-59041800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr1:59041000-59043200	Active TSS	HMEC	breast
12	chr1:59041200-59041800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
13	chr1:59041200-59042000	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:59041200-59042200	Transcr. at gene 5' and 3'	Esophagus	oesophagus
15	chr1:59041200-59042200	Active TSS	Lung	lung
16	chr1:59041200-59042800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:59041200-59043200	ZNF genes & repeats	GM12878-XiMat	blood
18	chr1:59041200-59044200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
19	chr1:59041400-59041800	Bivalent/Poised TSS	Primary B cells from cord blood	blood
20	chr1:59041400-59041800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
21	chr1:59041400-59042200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
22	chr1:59041400-59043000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
23	chr1:59041400-59043200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
24	chr1:59041400-59043200	Active TSS	Hela-S3	cervix
25	chr1:59041400-59043400	Bivalent/Poised TSS	Fetal Kidney	kidney
26	chr1:59041400-59043800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
27	chr1:59041400-59043800	Bivalent Enhancer	Fetal Heart	heart
28	chr1:59041600-59041800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:59041600-59041800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr1:59041600-59041800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
31	chr1:59041600-59041800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr1:59041600-59041800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
33	chr1:59041600-59041800	Bivalent/Poised TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr1:59041600-59041800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:59041600-59041800	Bivalent Enhancer	Adipose Nuclei	Adipose
36	chr1:59041600-59042000	Bivalent Enhancer	Colon Smooth Muscle	Colon
37	chr1:59041600-59042200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
38	chr1:59041600-59042400	Bivalent/Poised TSS	Fetal Lung	lung
39	chr1:59041600-59043000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr1:59041600-59043000	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr1:59041600-59043200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
42	chr1:59041600-59043200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr1:59041600-59043200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
44	chr1:59041600-59043200	Bivalent/Poised TSS	Thymus	Thymus
45	chr1:59041600-59043400	Active TSS	HUVEC	blood vessel
46	chr1:59041600-59043600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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