Variant report

Variant	rs73551709
Chromosome Location	chr19:39634425-39634426
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39631951..39634842-chr19:39640711..39642927,2	MCF-7	breast:
2	chr19:39633693..39637840-chr19:39657942..39661020,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130669	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2318900	1.00[AMR][1000 genomes]
rs2569366	1.00[AMR][1000 genomes]
rs500644	1.00[AMR][1000 genomes]
rs514968	0.94[AFR][1000 genomes]
rs534801	1.00[AMR][1000 genomes]
rs690929	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs692338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833829	chr19:39569681-39730777	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv432048	chr19:39572060-39850060	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39617000-39635000	Weak transcription	Aorta	Aorta
2	chr19:39617400-39659800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr19:39617800-39641600	Weak transcription	Thymus	Thymus
4	chr19:39618400-39646600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr19:39622400-39635200	Weak transcription	Fetal Brain Female	brain
6	chr19:39622600-39639600	Weak transcription	HSMM	muscle
7	chr19:39623000-39635200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr19:39623400-39646000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr19:39624000-39647000	Weak transcription	NHLF	lung
10	chr19:39624200-39634800	Weak transcription	Fetal Kidney	kidney
11	chr19:39627200-39646800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr19:39627600-39635000	Weak transcription	NHEK	skin
13	chr19:39627600-39641200	Weak transcription	Hela-S3	cervix
14	chr19:39627600-39645800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr19:39629200-39639400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr19:39629600-39637600	Genic enhancers	Fetal Intestine Small	intestine
17	chr19:39630200-39634800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr19:39630400-39635000	Weak transcription	NH-A	brain
19	chr19:39630600-39634600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr19:39630600-39634800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr19:39630600-39635000	Weak transcription	Brain Angular Gyrus	brain
22	chr19:39630800-39635000	Weak transcription	Small Intestine	intestine
23	chr19:39630800-39646800	Weak transcription	Osteobl	bone
24	chr19:39630800-39651000	Weak transcription	NHDF-Ad	bronchial
25	chr19:39631000-39634800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr19:39631000-39634800	Weak transcription	Fetal Brain Male	brain
27	chr19:39631000-39660000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr19:39631200-39634600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr19:39631200-39634600	Weak transcription	HUVEC	blood vessel
30	chr19:39631200-39634800	Weak transcription	Adipose Nuclei	Adipose
31	chr19:39631200-39634800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr19:39631200-39634800	Weak transcription	Right Atrium	heart
33	chr19:39631200-39634800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr19:39631200-39634800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr19:39631200-39635000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr19:39631200-39635000	Weak transcription	Left Ventricle	heart
37	chr19:39631200-39637200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr19:39631400-39634800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr19:39631400-39634800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr19:39631400-39634800	Weak transcription	Colon Smooth Muscle	Colon
41	chr19:39631400-39634800	Weak transcription	Fetal Muscle Leg	muscle
42	chr19:39631400-39634800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr19:39631600-39634800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr19:39631600-39634800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr19:39631600-39634800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr19:39631600-39635000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr19:39631800-39634600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr19:39631800-39634600	Weak transcription	Fetal Lung	lung
49	chr19:39631800-39634800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr19:39631800-39634800	Weak transcription	H9 Cell Line	embryonic stem cell

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