Variant report

Variant	rs73551772
Chromosome Location	chr6:132511910-132511911
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132506466-132514341	GM12878	blood:
2	6:132176847-132180372..6:132506466-132514341	GM12878	blood:
3	6:132182612-132191683..6:132506466-132514341	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73544034	1.00[AFR][1000 genomes]
rs73544038	1.00[AFR][1000 genomes]
rs73549505	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132508400-132513400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132509000-132512400	Enhancers	HUVEC	blood vessel
3	chr6:132509600-132514200	Enhancers	Osteobl	bone
4	chr6:132509600-132514600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:132509800-132512800	Enhancers	NH-A	brain
6	chr6:132509800-132513000	Enhancers	NHDF-Ad	bronchial
7	chr6:132510000-132512200	Enhancers	HMEC	breast
8	chr6:132510000-132512800	Enhancers	HSMM	muscle
9	chr6:132510000-132513000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:132510200-132513400	Enhancers	NHLF	lung
11	chr6:132510400-132512800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:132510600-132512600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:132510600-132512600	Weak transcription	Small Intestine	intestine
14	chr6:132511200-132512000	Enhancers	Adipose Nuclei	Adipose
15	chr6:132511200-132512000	Enhancers	Rectal Smooth Muscle	rectum
16	chr6:132511200-132512400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:132511400-132512000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr6:132511400-132512000	Enhancers	Stomach Smooth Muscle	stomach
19	chr6:132511400-132512200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:132511400-132512200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:132511400-132512200	Enhancers	Colon Smooth Muscle	Colon
22	chr6:132511400-132513000	Enhancers	HSMMtube	muscle
23	chr6:132511600-132512000	Enhancers	Aorta	Aorta
24	chr6:132511600-132514000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:132511800-132512000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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