Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BRCA1	chr6:117761605-117762791	Hela-S3	cervix:	n/a	n/a
2	SP1	chr6:117761688-117763617	A549	lung:	n/a	n/a
3	TCF12	chr6:117761585-117763733	A549	lung:	n/a	n/a
4	TCF12	chr6:117761687-117763150	SK-N-SH	brain:	n/a	n/a
5	GATA3	chr6:117761550-117763737	A549	lung:	n/a	chr6:117762884-117762893
6	EP300	chr6:117761608-117763725	A549	lung:	n/a	chr6:117763160-117763174
7	EP300	chr6:117761674-117763448	Hela-S3	cervix:	n/a	chr6:117763160-117763174
8	TBP	chr6:117761697-117762762	Hela-S3	cervix:	n/a	n/a
9	GTF2F1	chr6:117761699-117762764	Hela-S3	cervix:	n/a	n/a
10	STAT3	chr6:117761688-117762763	MCF10A-Er-Src	breast:	n/a	chr6:117762443-117762451
11	POLR2A	chr6:117761449-117762789	U87	brain:	n/a	n/a
12	GATA3	chr6:117761686-117763153	SK-N-SH	brain:	n/a	chr6:117762884-117762893
13	GATA3	chr6:117761701-117763167	SK-N-SH	brain:	n/a	chr6:117762884-117762893
14	POLR2A	chr6:117760533-117764140	MCF10A-Er-Src	breast:	n/a	n/a
15	POLR2A	chr6:117761443-117762789	U87	brain:	n/a	n/a
16	MAX	chr6:117761639-117762726	Hela-S3	cervix:	n/a	n/a
17	CEBPB	chr6:117761621-117763497	Hela-S3	cervix:	n/a	chr6:117762474-117762485 chr6:117763106-117763118 chr6:117763228-117763239 chr6:117763159-117763172 chr6:117762474-117762485 chr6:117763228-117763241 chr6:117763230-117763241 chr6:117763159-117763170 chr6:117763230-117763241 chr6:117762799-117762810 chr6:117763210-117763221
18	POLR2A	chr6:117760973-117764365	MCF10A-Er-Src	breast:	n/a	n/a
19	SETDB1	chr6:117761588-117762433	U2OS	brain:	n/a	n/a
20	FOSL2	chr6:117761557-117763553	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000221434	TF binding region

rSNPs within LD-proxies of this variant (count:8)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv966655	chr6:117758375-117766294	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117760000-117762000	Enhancers	Hela-S3	cervix
2	chr6:117760000-117762600	Enhancers	HMEC	breast
3	chr6:117761000-117762000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:117761000-117762600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:117761200-117762000	Weak transcription	Osteobl	bone
6	chr6:117761200-117762200	Weak transcription	A549	lung
7	chr6:117761200-117762800	Weak transcription	HSMM	muscle
8	chr6:117761200-117763400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:117761600-117762800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:117761600-117762800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:117761600-117763800	Enhancers	NHEK	skin

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