Variant report

Variant	rs73554972
Chromosome Location	chr11:108539431-108539432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108534855..108537733-chr11:108539140..108540648,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178105	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11212756	0.96[AFR][1000 genomes]
rs12279185	0.93[AFR][1000 genomes]
rs12281684	0.96[AFR][1000 genomes]
rs6589030	0.89[AFR][1000 genomes]
rs7934946	0.86[AFR][1000 genomes]
rs7939884	0.90[AFR][1000 genomes]
rs7948143	0.82[AFR][1000 genomes]
rs7951395	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108536600-108541000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:108536600-108541000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:108536600-108578400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:108536800-108539600	Enhancers	Ovary	ovary
5	chr11:108536800-108540400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr11:108536800-108541000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:108536800-108542800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:108536800-108546400	Weak transcription	Thymus	Thymus
9	chr11:108536800-108547400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:108536800-108547600	Weak transcription	Colonic Mucosa	Colon
11	chr11:108536800-108548400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:108536800-108549800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:108537000-108540200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr11:108537000-108541000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:108537000-108541000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:108537000-108541000	Weak transcription	NHDF-Ad	bronchial
17	chr11:108537000-108542800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:108537000-108542800	Weak transcription	NH-A	brain
19	chr11:108537000-108545200	Weak transcription	Fetal Intestine Large	intestine
20	chr11:108537000-108545400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:108537000-108545400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:108537000-108545400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:108537000-108545800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:108537000-108546200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:108537000-108546200	Weak transcription	Fetal Kidney	kidney
26	chr11:108537200-108541200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:108537200-108543000	Weak transcription	Fetal Lung	lung
28	chr11:108537200-108546600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:108537400-108539800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:108537400-108540000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:108537400-108540800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:108537400-108540800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:108537400-108541000	Weak transcription	HSMMtube	muscle
34	chr11:108537400-108541200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:108537400-108545600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr11:108537400-108546000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:108537400-108546000	Weak transcription	Placenta	Placenta
38	chr11:108537400-108546000	Weak transcription	Fetal Thymus	thymus
39	chr11:108537400-108546400	Weak transcription	Lung	lung
40	chr11:108537600-108546000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:108537600-108546000	Weak transcription	Left Ventricle	heart
42	chr11:108537600-108546200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:108537800-108539600	Weak transcription	Aorta	Aorta
44	chr11:108537800-108539800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:108537800-108540000	Weak transcription	Fetal Intestine Small	intestine
46	chr11:108537800-108540000	Weak transcription	Psoas Muscle	Psoas
47	chr11:108537800-108541400	Enhancers	Duodenum Mucosa	Duodenum
48	chr11:108537800-108542800	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr11:108537800-108542800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr11:108537800-108543000	Weak transcription	Brain Angular Gyrus	brain

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