Variant report

Variant	rs73555372
Chromosome Location	chr11:107890339-107890340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107888132..107892313-chr11:107893387..107897058,4	K562	blood:
2	chr11:107887094..107888620-chr11:107890311..107893123,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11212474	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11212475	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11600706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600740	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11602683	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603079	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605419	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605878	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606820	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11607758	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822270	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822609	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822651	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825746	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825936	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11828176	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107675	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17617000	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3741053	0.85[AMR][1000 genomes]
rs4565865	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58243661	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588998	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103534	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107097	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118335	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125285	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130647	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73555359	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73555391	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73557106	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73557111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73557122	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73557155	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73557188	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927717	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929383	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7936826	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943669	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7947408	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv521771	chr11:107590335-107904646	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1048938	chr11:107604473-107929950	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
6	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv1047984	chr11:107794729-107950746	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv1040345	chr11:107824764-107924309	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
9	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107880800-107890600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:107881000-107891000	Weak transcription	Lung	lung
3	chr11:107881000-107904000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:107881000-107904800	Weak transcription	Placenta	Placenta
5	chr11:107881200-107890600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:107881600-107896200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:107881600-107904600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr11:107881800-107890400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:107882200-107890600	Weak transcription	HSMMtube	muscle
10	chr11:107882200-107890600	Weak transcription	NHLF	lung
11	chr11:107882200-107894800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:107882200-107896200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:107882200-107896600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:107882200-107904800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:107882200-107904800	Weak transcription	Fetal Intestine Large	intestine
16	chr11:107882200-107907800	Weak transcription	Fetal Kidney	kidney
17	chr11:107882200-107908000	Weak transcription	A549	lung
18	chr11:107882200-107917000	Weak transcription	NH-A	brain
19	chr11:107882600-107906200	Weak transcription	Fetal Intestine Small	intestine
20	chr11:107883000-107896000	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:107883400-107896000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:107883600-107893400	Weak transcription	Right Ventricle	heart
23	chr11:107883800-107890400	Weak transcription	Left Ventricle	heart
24	chr11:107883800-107890600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:107883800-107890800	Weak transcription	Small Intestine	intestine
26	chr11:107884000-107896200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:107884200-107896000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:107884200-107904800	Weak transcription	HUVEC	blood vessel
29	chr11:107884400-107890400	Weak transcription	Psoas Muscle	Psoas
30	chr11:107884400-107891600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:107884400-107895600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:107884400-107895600	Weak transcription	Fetal Lung	lung
33	chr11:107884400-107926200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:107884400-107942000	Weak transcription	Esophagus	oesophagus
35	chr11:107884600-107890600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr11:107884600-107896200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr11:107884600-107901600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:107884600-107905000	Weak transcription	Brain Germinal Matrix	brain
39	chr11:107884800-107929200	Weak transcription	NHEK	skin
40	chr11:107885000-107890400	Weak transcription	Brain Anterior Caudate	brain
41	chr11:107885000-107890800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:107885000-107904000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr11:107885000-107904200	Weak transcription	HSMM	muscle
44	chr11:107885200-107890400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:107885200-107890600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr11:107885200-107890600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:107885200-107890800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr11:107885200-107894600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:107885200-107895600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:107885200-107896400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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