Variant report

Variant	rs73556089
Chromosome Location	chr6:140021134-140021135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6902352	0.85[AFR][1000 genomes]
rs73556088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558031	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558053	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv823851	chr6:140019537-140024421	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140019600-140021200	Enhancers	Fetal Lung	lung
2	chr6:140019600-140022000	Enhancers	Fetal Kidney	kidney
3	chr6:140019600-140022600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr6:140019800-140021200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:140019800-140021200	Enhancers	Adipose Nuclei	Adipose
6	chr6:140020000-140021200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:140020200-140021200	Enhancers	NHDF-Ad	bronchial
8	chr6:140020200-140021800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:140020400-140021200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:140020600-140021400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:140020600-140021600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:140020800-140021800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr6:140021000-140021400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:140021000-140022600	Enhancers	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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