Variant report

Variant	rs73556278
Chromosome Location	chr19:44557035-44557036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44555396..44557599-chr19:44598429..44600981,2	MCF-7	breast:
2	chr19:44554677..44558669-chr19:44574332..44578828,6	MCF-7	breast:
3	chr19:44487777..44490285-chr19:44555817..44558004,3	MCF-7	breast:
4	chr19:44555737..44557669-chr19:44596681..44600019,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186026	Chromatin interaction
ENSG00000267680	Chromatin interaction
ENSG00000204920	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61729338	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73554199	1.00[AMR][1000 genomes]
rs73556206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556272	0.98[AFR][1000 genomes]
rs73558229	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44554800-44557200	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr19:44554800-44557200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:44555000-44557200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr19:44555000-44557200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr19:44555000-44557200	Active TSS	Fetal Intestine Large	intestine
6	chr19:44555000-44557400	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr19:44555000-44557600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr19:44555200-44557600	Active TSS	Fetal Intestine Small	intestine
9	chr19:44555200-44557600	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr19:44555400-44557400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr19:44555600-44557200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr19:44555600-44557200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr19:44555600-44557200	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr19:44555600-44557200	Active TSS	HSMMtube	muscle
15	chr19:44555800-44557200	Active TSS	Muscle Satellite Cultured Cells	--
16	chr19:44555800-44557200	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr19:44555800-44557400	Active TSS	Rectal Smooth Muscle	rectum
18	chr19:44556000-44557200	Active TSS	Stomach Smooth Muscle	stomach
19	chr19:44556000-44557200	Active TSS	NHLF	lung
20	chr19:44556400-44557200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr19:44556400-44557200	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr19:44556400-44557200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr19:44556400-44557400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr19:44556600-44557200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr19:44556600-44557200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr19:44556600-44557200	Flanking Active TSS	Brain Substantia Nigra	brain
27	chr19:44556600-44557400	Flanking Active TSS	Liver	Liver
28	chr19:44556600-44557400	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr19:44556600-44557400	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr19:44556600-44557400	Enhancers	Small Intestine	intestine
31	chr19:44556600-44557400	Flanking Active TSS	Dnd41	blood
32	chr19:44556600-44557600	Enhancers	Spleen	Spleen
33	chr19:44556600-44559400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr19:44556600-44564600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr19:44556800-44557200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr19:44556800-44557200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr19:44556800-44557200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr19:44556800-44557200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr19:44556800-44557200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr19:44556800-44557200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr19:44556800-44557200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr19:44556800-44557200	Flanking Active TSS	Brain Angular Gyrus	brain
43	chr19:44556800-44557200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
44	chr19:44556800-44557200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr19:44556800-44557200	Flanking Active TSS	Fetal Brain Male	brain
46	chr19:44556800-44557200	Flanking Active TSS	Fetal Brain Female	brain
47	chr19:44556800-44557200	Flanking Active TSS	Fetal Heart	heart
48	chr19:44556800-44557200	Flanking Active TSS	Fetal Kidney	kidney
49	chr19:44556800-44557200	Flanking Active TSS	Fetal Lung	lung
50	chr19:44556800-44557200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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