Variant report

Variant	rs73557785
Chromosome Location	chr6:133647876-133647877
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10485231	0.85[AFR][1000 genomes]
rs10485233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17062336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17062358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35757855	1.00[AMR][1000 genomes]
rs73557778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73559603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73559604	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133613000-133655000	Weak transcription	Hela-S3	cervix
2	chr6:133643200-133658200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133646200-133648000	Enhancers	Psoas Muscle	Psoas
4	chr6:133646200-133648200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:133646400-133648600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr6:133646800-133648000	Enhancers	Right Atrium	heart
7	chr6:133647000-133648200	Enhancers	Left Ventricle	heart
8	chr6:133647200-133648200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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