Variant report

Variant	rs73558833
Chromosome Location	chr19:51978253-51978254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs36501	0.93[EUR][1000 genomes]
rs73558835	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558844	0.86[EUR][1000 genomes]
rs73558846	0.86[EUR][1000 genomes]
rs73558851	0.86[EUR][1000 genomes]
rs73558859	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv544051	chr19:51944903-52147459	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51975800-51981600	Enhancers	Fetal Intestine Small	intestine
2	chr19:51975800-51981800	Enhancers	Fetal Intestine Large	intestine
3	chr19:51976600-51979200	Enhancers	HepG2	liver
4	chr19:51977200-51978400	Enhancers	Duodenum Mucosa	Duodenum
5	chr19:51977800-51978400	Flanking Active TSS	Stomach Mucosa	stomach
6	chr19:51977800-51978400	Enhancers	HMEC	breast
7	chr19:51977800-51978600	Enhancers	HUVEC	blood vessel
8	chr19:51978000-51978400	Enhancers	Gastric	stomach
9	chr19:51978000-51978600	Flanking Active TSS	A549	lung
10	chr19:51978000-51978800	Enhancers	NHEK	skin
11	chr19:51978000-51979000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr19:51978000-51980400	Weak transcription	K562	blood
13	chr19:51978200-51978400	Bivalent Enhancer	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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