Variant report

Variant	rs73558915
Chromosome Location	chr19:44323292-44323293
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7259096	0.91[AFR][1000 genomes]
rs73558515	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44319400-44324200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr19:44321600-44323800	Weak transcription	Brain Angular Gyrus	brain
3	chr19:44321800-44323800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr19:44321800-44324000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr19:44321800-44324200	Weak transcription	HSMMtube	muscle
6	chr19:44322200-44324200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:44322200-44324200	Enhancers	NHEK	skin
8	chr19:44322800-44324200	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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