Variant report

Variant	rs73559649
Chromosome Location	chr19:40935137-40935138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:40919789..40935162-chr19:40946854..40955873,58	MCF-7	breast:
2	chr19:40934623..40937305-chr19:40940137..40941658,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167565	Chromatin interaction
ENSG00000268366	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56743160	1.00[AMR][1000 genomes]
rs58341807	1.00[AMR][1000 genomes]
rs58675277	1.00[AMR][1000 genomes]
rs7249252	1.00[AMR][1000 genomes]
rs73555546	1.00[AMR][1000 genomes]
rs73555594	1.00[AMR][1000 genomes]
rs73557743	1.00[AMR][1000 genomes]
rs73557755	1.00[AMR][1000 genomes]
rs73559610	1.00[AMR][1000 genomes]
rs8107448	1.00[AMR][1000 genomes]
rs8109544	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv833831	chr19:40796740-40960865	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv911706	chr19:40842529-40969203	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv911707	chr19:40855255-40948202	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv911708	chr19:40855255-40982375	Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
6	esv1830682	chr19:40880127-41270055	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
7	nsv911709	chr19:40928944-41060616	Bivalent/Poised TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40932400-40938400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr19:40932600-40937200	Weak transcription	Fetal Lung	lung
3	chr19:40932600-40937400	Weak transcription	Fetal Stomach	stomach
4	chr19:40932600-40937600	Weak transcription	Fetal Muscle Leg	muscle
5	chr19:40932600-40937800	Weak transcription	Fetal Heart	heart
6	chr19:40932600-40937800	Weak transcription	Fetal Kidney	kidney
7	chr19:40932600-40938000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr19:40932600-40938000	Weak transcription	Adipose Nuclei	Adipose
9	chr19:40932600-40938000	Weak transcription	Fetal Intestine Small	intestine
10	chr19:40932600-40938200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr19:40932600-40938400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr19:40932600-40938400	Weak transcription	Liver	Liver
13	chr19:40932600-40938400	Weak transcription	Brain Hippocampus Middle	brain
14	chr19:40932600-40938400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr19:40932600-40938400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr19:40932600-40938400	Weak transcription	HSMM	muscle
17	chr19:40932600-40938600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr19:40932600-40938600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr19:40932600-40938600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr19:40932600-40938600	Weak transcription	Right Atrium	heart
21	chr19:40932600-40939000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr19:40932600-40939200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr19:40932600-40939200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr19:40932600-40939200	Weak transcription	Primary T cells from cord blood	blood
25	chr19:40932600-40939200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr19:40932600-40939200	Weak transcription	GM12878-XiMat	blood
27	chr19:40933000-40935200	Enhancers	HepG2	liver
28	chr19:40933000-40937600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr19:40933000-40938600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr19:40933200-40937600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr19:40933200-40937800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr19:40933200-40938000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr19:40933200-40938400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr19:40933200-40938600	Weak transcription	Colonic Mucosa	Colon
35	chr19:40933200-40938600	Weak transcription	Pancreas	Pancrea
36	chr19:40933200-40939200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr19:40933400-40937400	Weak transcription	K562	blood
38	chr19:40933400-40937800	Weak transcription	A549	lung
39	chr19:40933400-40937800	Weak transcription	Hela-S3	cervix
40	chr19:40933400-40938400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr19:40933400-40938400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr19:40933400-40938600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr19:40933400-40938600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr19:40933400-40938600	Weak transcription	HMEC	breast
45	chr19:40934800-40935200	Enhancers	Esophagus	oesophagus
46	chr19:40935000-40935400	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links