Variant report

Variant	rs73559826
Chromosome Location	chr11:73795773-73795774
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17132625	0.83[AFR][1000 genomes]
rs17132684	1.00[AFR][1000 genomes]
rs57102338	0.80[AFR][1000 genomes]
rs57332560	0.93[AFR][1000 genomes]
rs58489220	0.83[AFR][1000 genomes]
rs58508932	0.83[AFR][1000 genomes]
rs61117474	0.87[AFR][1000 genomes]
rs73552755	0.80[AFR][1000 genomes]
rs73555956	0.80[AFR][1000 genomes]
rs73555969	0.80[AFR][1000 genomes]
rs73555972	0.80[AFR][1000 genomes]
rs73555978	0.80[AFR][1000 genomes]
rs73555995	0.83[AFR][1000 genomes]
rs73557968	0.83[AFR][1000 genomes]
rs73557980	0.83[AFR][1000 genomes]
rs73557996	0.83[AFR][1000 genomes]
rs73557998	0.83[AFR][1000 genomes]
rs73559804	0.82[AFR][1000 genomes]
rs73559807	0.93[AFR][1000 genomes]
rs73559810	0.93[AFR][1000 genomes]
rs73559833	1.00[AFR][1000 genomes]
rs73559843	1.00[AFR][1000 genomes]
rs73559845	1.00[AFR][1000 genomes]
rs73559847	1.00[AFR][1000 genomes]
rs73559849	1.00[AFR][1000 genomes]
rs73559860	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
2	chr11:73750800-73800400	Weak transcription	HMEC	breast
3	chr11:73753200-73796400	Weak transcription	Small Intestine	intestine
4	chr11:73753200-73804600	Weak transcription	Colonic Mucosa	Colon
5	chr11:73760000-73802600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:73768800-73798200	Weak transcription	NHEK	skin
7	chr11:73777600-73818600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:73781200-73795800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:73781800-73849200	Weak transcription	Stomach Mucosa	stomach
10	chr11:73782200-73796400	Weak transcription	Right Ventricle	heart
11	chr11:73782600-73823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:73784200-73796600	Weak transcription	Psoas Muscle	Psoas
13	chr11:73784200-73801000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:73785400-73800400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr11:73785600-73796800	Weak transcription	Fetal Kidney	kidney
16	chr11:73785600-73797400	Weak transcription	HUVEC	blood vessel
17	chr11:73785600-73800200	Weak transcription	NH-A	brain
18	chr11:73785600-73803400	Weak transcription	NHDF-Ad	bronchial
19	chr11:73785600-73823600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:73787800-73811400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:73789400-73800800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:73789600-73796400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:73789600-73796400	Weak transcription	GM12878-XiMat	blood
24	chr11:73789600-73796800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:73789600-73796800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:73789600-73798600	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:73789600-73799400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr11:73789600-73799400	Weak transcription	Osteobl	bone
29	chr11:73789600-73800600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:73789800-73795800	Weak transcription	Fetal Brain Male	brain
31	chr11:73789800-73796400	Weak transcription	A549	lung
32	chr11:73789800-73796600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:73789800-73796600	Weak transcription	Aorta	Aorta
34	chr11:73789800-73796600	Weak transcription	NHLF	lung
35	chr11:73789800-73797000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:73789800-73800600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:73789800-73800600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:73789800-73801000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:73790000-73795800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:73790000-73795800	Weak transcription	Hela-S3	cervix
41	chr11:73790000-73796000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr11:73790000-73796600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:73790000-73796600	Weak transcription	Gastric	stomach
44	chr11:73790000-73800600	Weak transcription	Esophagus	oesophagus
45	chr11:73790200-73795800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:73790200-73796600	Weak transcription	Fetal Intestine Large	intestine
47	chr11:73790200-73800400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr11:73790400-73796000	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:73790800-73795800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr11:73792600-73795800	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links