Variant report

Variant	rs73560816
Chromosome Location	chr19:42033982-42033983
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10406890	1.00[AMR][1000 genomes]
rs10414658	1.00[AMR][1000 genomes]
rs10418236	1.00[AMR][1000 genomes]
rs10425322	1.00[AMR][1000 genomes]
rs16975289	1.00[AMR][1000 genomes]
rs73558643	1.00[AMR][1000 genomes]
rs73558647	1.00[AMR][1000 genomes]
rs73558696	1.00[AMR][1000 genomes]
rs73558697	1.00[AMR][1000 genomes]
rs73558700	1.00[AMR][1000 genomes]
rs73560806	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73560817	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73560837	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510767	chr19:41962486-42049165	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv911770	chr19:41962486-42066279	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv911771	chr19:41962486-42085873	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1055515	chr19:41968797-42057334	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv911772	chr19:41985624-42066279	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv911773	chr19:42001210-42085873	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv579602	chr19:42015468-42047924	Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42029000-42036200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr19:42029600-42034000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:42029600-42034200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr19:42029600-42034200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:42029600-42034200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr19:42029600-42034800	Weak transcription	Primary B cells from cord blood	blood
7	chr19:42029800-42034600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr19:42029800-42037600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr19:42033000-42034000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr19:42033600-42037600	ZNF genes & repeats	GM12878-XiMat	blood
11	chr19:42033800-42034400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr19:42033800-42034600	Bivalent Enhancer	NHDF-Ad	bronchial
13	chr19:42033800-42034800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr19:42033800-42035400	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links