Variant report

Variant	rs73562026
Chromosome Location	chr16:48367948-48367949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48367808..48369426-chr16:48417936..48419640,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196470	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs35374298	1.00[AMR][1000 genomes]
rs57503116	1.00[AMR][1000 genomes]
rs57833761	1.00[AMR][1000 genomes]
rs57937994	1.00[AMR][1000 genomes]
rs60654623	1.00[AMR][1000 genomes]
rs60747434	1.00[AMR][1000 genomes]
rs60778835	1.00[AMR][1000 genomes]
rs7192772	1.00[AMR][1000 genomes]
rs73550078	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73550084	1.00[AMR][1000 genomes]
rs73550090	1.00[AMR][1000 genomes]
rs73550093	1.00[AMR][1000 genomes]
rs73550096	1.00[AMR][1000 genomes]
rs73550097	1.00[AMR][1000 genomes]
rs73550099	1.00[AMR][1000 genomes]
rs73551446	1.00[AMR][1000 genomes]
rs73551462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551474	1.00[AMR][1000 genomes]
rs73551482	1.00[AMR][1000 genomes]
rs73552007	1.00[AMR][1000 genomes]
rs73555664	1.00[AMR][1000 genomes]
rs73562044	1.00[AMR][1000 genomes]
rs73562047	1.00[AMR][1000 genomes]
rs73562067	1.00[AMR][1000 genomes]
rs73562076	1.00[AMR][1000 genomes]
rs8048632	1.00[AMR][1000 genomes]
rs8053521	1.00[AMR][1000 genomes]
rs8056369	1.00[AMR][1000 genomes]
rs8056984	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv1821072	chr16:48268318-48504364	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv833219	chr16:48290595-48459301	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1061708	chr16:48304343-48482594	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv542917	chr16:48304343-48482594	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv2758424	chr16:48329437-48479754	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	esv2758645	chr16:48329437-48479754	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48338600-48381200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr16:48339400-48368000	Weak transcription	Colonic Mucosa	Colon
3	chr16:48342200-48368000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr16:48343400-48375600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr16:48344600-48368200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:48346600-48368200	Weak transcription	Colon Smooth Muscle	Colon
7	chr16:48346800-48368200	Weak transcription	A549	lung
8	chr16:48347000-48368000	Weak transcription	Hela-S3	cervix
9	chr16:48347000-48368000	Weak transcription	K562	blood
10	chr16:48347000-48368200	Weak transcription	Placenta	Placenta
11	chr16:48347000-48368200	Weak transcription	Gastric	stomach
12	chr16:48347000-48368400	Weak transcription	Esophagus	oesophagus
13	chr16:48347400-48368200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr16:48347600-48368200	Weak transcription	Aorta	Aorta
15	chr16:48347600-48384800	Weak transcription	Fetal Kidney	kidney
16	chr16:48351600-48368200	Weak transcription	NHEK	skin
17	chr16:48352000-48368200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr16:48352000-48369600	Weak transcription	HSMM	muscle
19	chr16:48352200-48395400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr16:48352800-48368200	Weak transcription	Ovary	ovary
21	chr16:48352800-48368200	Weak transcription	HSMMtube	muscle
22	chr16:48352800-48368400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr16:48353200-48368200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr16:48353400-48368000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr16:48353400-48368200	Weak transcription	Lung	lung
26	chr16:48353400-48368200	Weak transcription	Spleen	Spleen
27	chr16:48353600-48368200	Weak transcription	Right Ventricle	heart
28	chr16:48354000-48369000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr16:48354200-48368400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr16:48354600-48368000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr16:48355600-48368200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr16:48355800-48368000	Weak transcription	NH-A	brain
33	chr16:48355800-48368200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr16:48355800-48368200	Weak transcription	HMEC	breast
35	chr16:48355800-48375800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr16:48355800-48384800	Weak transcription	Small Intestine	intestine
37	chr16:48356600-48368200	Weak transcription	Fetal Brain Female	brain
38	chr16:48357000-48368000	Weak transcription	Fetal Thymus	thymus
39	chr16:48357000-48368400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr16:48358400-48368200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr16:48358400-48368600	Weak transcription	Fetal Brain Male	brain
42	chr16:48359400-48368200	Weak transcription	Fetal Intestine Large	intestine
43	chr16:48361200-48368200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr16:48362200-48368200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr16:48362200-48368200	Weak transcription	Fetal Intestine Small	intestine
46	chr16:48362600-48368200	Weak transcription	Fetal Stomach	stomach
47	chr16:48363400-48383400	Weak transcription	HUVEC	blood vessel
48	chr16:48364400-48378800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr16:48364600-48368000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr16:48364600-48368200	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links