Variant report

Variant	rs73563067
Chromosome Location	chr6:117587620-117587621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs41395044	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41505850	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55863131	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56104802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59522404	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59561211	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73561113	1.00[EUR][1000 genomes]
rs73561129	1.00[EUR][1000 genomes]
rs73561153	1.00[EUR][1000 genomes]
rs73563072	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73766179	1.00[EUR][1000 genomes]
rs7752773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948766	chr6:117407275-117641016	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758076	chr6:117431224-117627275	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759465	chr6:117431224-117627275	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830785	chr6:117448943-117627275	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2757190	chr6:117464048-117609529	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117585600-117587800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
2	chr6:117585600-117587800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr6:117585600-117587800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:117585600-117587800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:117585600-117589200	Active TSS	HSMMtube	muscle
6	chr6:117585600-117589400	Active TSS	Psoas Muscle	Psoas
7	chr6:117586000-117587800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:117586400-117587800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:117586400-117587800	Bivalent Enhancer	Stomach Mucosa	stomach
10	chr6:117586400-117589200	Active TSS	HSMM	muscle
11	chr6:117586600-117587800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
12	chr6:117586800-117587800	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
13	chr6:117586800-117587800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
14	chr6:117587000-117587800	Bivalent Enhancer	Fetal Heart	heart
15	chr6:117587000-117587800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
16	chr6:117587200-117587800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
17	chr6:117587200-117587800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:117587200-117587800	Bivalent Enhancer	Fetal Intestine Large	intestine
19	chr6:117587200-117587800	Bivalent Enhancer	Lung	lung
20	chr6:117587200-117587800	Active TSS	Right Ventricle	heart
21	chr6:117587200-117587800	Enhancers	Spleen	Spleen
22	chr6:117587200-117589400	Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr6:117587400-117587800	Bivalent Enhancer	Brain Angular Gyrus	brain
24	chr6:117587400-117587800	Bivalent Enhancer	Brain Germinal Matrix	brain
25	chr6:117587400-117587800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr6:117587400-117588000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:117587400-117588000	Bivalent Enhancer	Left Ventricle	heart
28	chr6:117587400-117588000	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
29	chr6:117587400-117589600	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
30	chr6:117587400-117591200	Weak transcription	Pancreas	Pancrea
31	chr6:117587600-117587800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
32	chr6:117587600-117587800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
33	chr6:117587600-117587800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:117587600-117587800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
35	chr6:117587600-117587800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
36	chr6:117587600-117587800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:117587600-117587800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:117587600-117587800	Flanking Bivalent TSS/Enh	Liver	Liver
39	chr6:117587600-117587800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
40	chr6:117587600-117587800	Bivalent Enhancer	Brain Substantia Nigra	brain
41	chr6:117587600-117587800	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
42	chr6:117587600-117587800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
43	chr6:117587600-117587800	Flanking Active TSS	Ovary	ovary
44	chr6:117587600-117588000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
45	chr6:117587600-117588000	Bivalent Enhancer	Adipose Nuclei	Adipose
46	chr6:117587600-117589400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle

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