Variant report

Variant	rs7356588
Chromosome Location	chr5:152871422-152871423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10476795	0.81[AFR][1000 genomes]
rs10477080	0.81[AFR][1000 genomes]
rs7727515	0.80[AFR][1000 genomes]
rs9324748	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1019051	chr5:152550863-153057896	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv868912	chr5:152582002-153095306	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152869400-152872000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
2	chr5:152869600-152872600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:152869600-152873000	Active TSS	Fetal Brain Female	brain
4	chr5:152869800-152871800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr5:152869800-152872000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:152869800-152872000	Active TSS	HSMMtube	muscle
7	chr5:152869800-152872600	Active TSS	Aorta	Aorta
8	chr5:152869800-152873600	Active TSS	Brain Angular Gyrus	brain
9	chr5:152870000-152872400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:152870200-152871600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:152870200-152871600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr5:152870200-152872000	Active TSS	NHDF-Ad	bronchial
13	chr5:152870200-152872600	Active TSS	Fetal Brain Male	brain
14	chr5:152870400-152871600	Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr5:152870400-152872000	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr5:152870400-152872000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:152870600-152871800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:152870600-152871800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
19	chr5:152870800-152871600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
20	chr5:152870800-152871600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:152870800-152871800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:152870800-152871800	Flanking Active TSS	Brain Germinal Matrix	brain
23	chr5:152870800-152872000	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
24	chr5:152870800-152872200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:152870800-152872200	Active TSS	HSMM	muscle
26	chr5:152870800-152874000	Active TSS	Brain Anterior Caudate	brain
27	chr5:152871000-152871600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
28	chr5:152871200-152871600	Bivalent/Poised TSS	Fetal Lung	lung
29	chr5:152871200-152871800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
30	chr5:152871200-152871800	Active TSS	NHLF	lung
31	chr5:152871200-152872000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
32	chr5:152871200-152872000	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:152871200-152873600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:152871200-152874200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:152871400-152871600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:152871400-152871600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
37	chr5:152871400-152871600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
38	chr5:152871400-152871600	Bivalent Enhancer	NH-A	brain
39	chr5:152871400-152871600	Enhancers	NHEK	skin
40	chr5:152871400-152871800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
41	chr5:152871400-152872000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr5:152871400-152872000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr5:152871400-152872000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr5:152871400-152872000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
45	chr5:152871400-152872200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain

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