Variant report

Variant	rs73566221
Chromosome Location	chr6:140089443-140089444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140082225..140084956-chr6:140088541..140090075,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56802971	1.00[AMR][1000 genomes]
rs57473424	1.00[AMR][1000 genomes]
rs57897801	1.00[AMR][1000 genomes]
rs60428452	1.00[AMR][1000 genomes]
rs61384433	1.00[AMR][1000 genomes]
rs6934955	1.00[AMR][1000 genomes]
rs73568280	1.00[AMR][1000 genomes]
rs73568295	1.00[AMR][1000 genomes]
rs73568298	1.00[AMR][1000 genomes]
rs73568300	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140079800-140090400	Weak transcription	Aorta	Aorta
2	chr6:140083400-140090200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:140086000-140092200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:140086000-140099400	Weak transcription	Ovary	ovary
5	chr6:140086000-140101000	Weak transcription	Left Ventricle	heart
6	chr6:140086400-140089600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:140086400-140097000	Weak transcription	Fetal Heart	heart
8	chr6:140086600-140089600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:140087400-140099200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:140087600-140089800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:140087800-140089600	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:140087800-140098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:140088200-140089800	Weak transcription	HSMMtube	muscle
14	chr6:140088200-140096200	Weak transcription	K562	blood
15	chr6:140088200-140100000	Weak transcription	NHDF-Ad	bronchial
16	chr6:140089400-140089600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:140089400-140089600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:140089400-140089600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:140089400-140089600	Enhancers	Psoas Muscle	Psoas
20	chr6:140089400-140089600	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr6:140089400-140089800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:140089400-140089800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:140089400-140089800	Enhancers	NHLF	lung
24	chr6:140089400-140090000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:140089400-140090200	Enhancers	HUES64 Cell Line	embryonic stem cell

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