Variant report

Variant	rs735694
Chromosome Location	chr1:210034029-210034030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210033587..210036202-chr1:210159897..210162588,2	MCF-7	breast:
2	chr1:210033301..210034521-chr1:210162056..210163321,7	MCF-7	breast:
3	chr1:210032919..210034879-chr1:210043076..210045650,2	K562	blood:
4	chr1:210032986..210034424-chr1:210162287..210163430,7	MCF-7	breast:
5	chr1:210033320..210034286-chr1:210162426..210163536,8	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1073150	0.88[EUR][1000 genomes]
rs11119358	0.85[EUR][1000 genomes]
rs1319435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415543	0.88[AMR][1000 genomes]
rs17015309	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17015330	0.88[EUR][1000 genomes]
rs17015361	0.88[EUR][1000 genomes]
rs170554	0.83[AFR][1000 genomes]
rs17389436	0.83[AFR][1000 genomes]
rs2064163	0.81[EUR][1000 genomes]
rs2205984	0.88[AMR][1000 genomes]
rs2206043	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227212	0.83[AFR][1000 genomes]
rs227213	0.83[AFR][1000 genomes]
rs227220	0.83[AFR][1000 genomes]
rs227222	0.83[AFR][1000 genomes]
rs2357230	0.88[EUR][1000 genomes]
rs4556361	0.87[EUR][1000 genomes]
rs55871867	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57315825	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59435160	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60326345	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61747285	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6540563	0.88[EUR][1000 genomes]
rs6540564	0.88[EUR][1000 genomes]
rs6698154	0.88[EUR][1000 genomes]
rs735693	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7511996	0.88[EUR][1000 genomes]
rs7525951	0.88[EUR][1000 genomes]
rs7540237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7551944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9430025	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs735694	TRAF3IP3	cis	Whole Blood	GTEx

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210017600-210041200	Weak transcription	Fetal Brain Male	brain
2	chr1:210025000-210035800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:210026200-210035400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:210026200-210035600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:210027600-210034200	Weak transcription	HMEC	breast
6	chr1:210027600-210034600	Weak transcription	K562	blood
7	chr1:210027600-210036200	Weak transcription	Fetal Lung	lung
8	chr1:210027600-210036800	Weak transcription	HSMM	muscle
9	chr1:210027800-210034200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:210027800-210034400	Weak transcription	NH-A	brain
11	chr1:210027800-210034800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:210027800-210035000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:210027800-210035400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:210028000-210034200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr1:210028000-210036200	Weak transcription	HSMMtube	muscle
16	chr1:210028200-210034200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:210028200-210036400	Weak transcription	Hela-S3	cervix
18	chr1:210028200-210042400	Weak transcription	NHDF-Ad	bronchial
19	chr1:210028400-210034200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr1:210028400-210034600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:210028400-210036800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr1:210028400-210037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:210028400-210039600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr1:210028800-210034200	Weak transcription	Adipose Nuclei	Adipose
25	chr1:210028800-210034200	Weak transcription	Liver	Liver
26	chr1:210028800-210034400	Weak transcription	NHEK	skin
27	chr1:210028800-210036800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr1:210029200-210034200	Weak transcription	Brain Hippocampus Middle	brain
29	chr1:210029200-210035800	Weak transcription	Brain Anterior Caudate	brain
30	chr1:210029200-210036200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr1:210029400-210034400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr1:210029400-210035000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:210029400-210035200	Weak transcription	Fetal Intestine Small	intestine
34	chr1:210029400-210036400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr1:210029600-210034800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:210029600-210035000	Weak transcription	Brain Germinal Matrix	brain
37	chr1:210029600-210035400	Weak transcription	Fetal Muscle Leg	muscle
38	chr1:210029600-210036200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:210029600-210036400	Weak transcription	Ovary	ovary
40	chr1:210029600-210037400	Weak transcription	Lung	lung
41	chr1:210029800-210035000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr1:210029800-210036200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:210029800-210036400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr1:210030200-210034400	Weak transcription	Brain Angular Gyrus	brain
45	chr1:210030200-210035000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:210030200-210035000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr1:210031000-210035800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr1:210031400-210034200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr1:210032200-210034200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr1:210032400-210035600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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