Variant report

Variant	rs73572268
Chromosome Location	chr16:79842433-79842434
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10438610	0.82[EUR][1000 genomes]
rs10871379	0.96[ASN][1000 genomes]
rs11150218	0.87[ASN][1000 genomes]
rs11643120	0.88[ASN][1000 genomes]
rs11646813	0.91[ASN][1000 genomes]
rs11649168	0.98[ASN][1000 genomes]
rs11865391	0.95[ASN][1000 genomes]
rs11865427	0.87[ASN][1000 genomes]
rs12928298	0.87[ASN][1000 genomes]
rs4243183	0.82[ASN][1000 genomes]
rs4369685	0.89[ASN][1000 genomes]
rs4553644	0.94[ASN][1000 genomes]
rs4889036	0.89[ASN][1000 genomes]
rs4889037	0.87[ASN][1000 genomes]
rs6564708	0.88[ASN][1000 genomes]
rs74039236	0.82[EUR][1000 genomes]
rs8063297	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79839000-79844200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:79839800-79844800	Weak transcription	K562	blood
3	chr16:79840000-79844200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr16:79841600-79842800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr16:79841600-79843000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr16:79841600-79843200	Enhancers	NHEK	skin
7	chr16:79841600-79844200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:79841800-79844800	Weak transcription	Fetal Lung	lung
9	chr16:79842000-79843600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr16:79842400-79842800	Enhancers	Esophagus	oesophagus
11	chr16:79842400-79842800	ZNF genes & repeats	Fetal Thymus	thymus
12	chr16:79842400-79843000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links