Variant report

Variant	rs73576478
Chromosome Location	chr11:127662139-127662140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10893752	0.82[AFR][1000 genomes]
rs11221043	0.86[EUR][1000 genomes]
rs1364789	0.82[AFR][1000 genomes]
rs1425220	0.82[AFR][1000 genomes]
rs1425221	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898445	chr11:127377733-127713173	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1037485	chr11:127582314-128301106	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1818193	chr11:127623438-127663921	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv556535	chr11:127656196-127737929	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127660400-127664800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:127660400-127664800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:127660400-127664800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:127660600-127665600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:127661400-127664800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:127661600-127662200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:127661600-127662200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:127662000-127662200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links