Variant report

Variant	rs73577314
Chromosome Location	chr11:100696413-100696414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:100691211..100693446-chr11:100695155..100697505,2	K562	blood:
2	chr11:100687804..100689545-chr11:100695788..100697568,2	K562	blood:
3	chr11:100694680..100697699-chr17:41464181..41467943,10	K562	blood:
4	chr11:100696179..100697700-chr17:41399375..41402173,3	K562	blood:
5	chr11:100696199..100697700-chr17:41464901..41467783,3	K562	blood:
6	chr11:100694700..100697700-chr17:41439505..41443891,3	K562	blood:

Variant related genes	Relation type
ENSG00000188825	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73575554	0.84[AFR][1000 genomes]
rs73575556	0.84[AFR][1000 genomes]
rs73575579	0.92[AFR][1000 genomes]
rs73575581	0.92[AFR][1000 genomes]
rs73575585	0.92[AFR][1000 genomes]
rs73577311	1.00[AFR][1000 genomes]
rs7932727	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100670000-100697400	Weak transcription	Placenta	Placenta
2	chr11:100681200-100698000	Weak transcription	Stomach Mucosa	stomach
3	chr11:100681400-100701000	Weak transcription	HSMM	muscle
4	chr11:100686200-100702800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:100688000-100698600	Weak transcription	NH-A	brain
6	chr11:100688000-100704000	Weak transcription	Right Ventricle	heart
7	chr11:100689000-100698600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:100689200-100698200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:100690800-100697200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:100691800-100696800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:100691800-100696800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:100692200-100698000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:100692800-100698200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:100693600-100697000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr11:100693600-100697000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:100693600-100697200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr11:100693600-100697200	Enhancers	Fetal Kidney	kidney
18	chr11:100694200-100698000	Weak transcription	Fetal Heart	heart
19	chr11:100694200-100698000	Weak transcription	Left Ventricle	heart
20	chr11:100694200-100698200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:100694200-100698400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:100694400-100701000	Weak transcription	HSMMtube	muscle
23	chr11:100694600-100698600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:100694800-100698200	Weak transcription	NHLF	lung
25	chr11:100695000-100697200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr11:100695000-100697800	Weak transcription	Right Atrium	heart
27	chr11:100695000-100701000	Weak transcription	Psoas Muscle	Psoas
28	chr11:100695200-100698000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:100695200-100698600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr11:100695400-100696600	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:100695400-100698000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:100695400-100698000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:100695600-100697800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:100695600-100698000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:100695600-100698000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:100695600-100698600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:100695800-100698000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr11:100696000-100696600	Enhancers	A549	lung
39	chr11:100696000-100696800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:100696000-100696800	Enhancers	Adipose Nuclei	Adipose
41	chr11:100696000-100696800	Bivalent Enhancer	Fetal Lung	lung
42	chr11:100696200-100696800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:100696200-100696800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:100696200-100696800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:100696200-100696800	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr11:100696200-100696800	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr11:100696200-100696800	Enhancers	NHDF-Ad	bronchial
48	chr11:100696200-100696800	Flanking Active TSS	NHEK	skin
49	chr11:100696200-100697000	Enhancers	HMEC	breast
50	chr11:100696200-100703000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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