Variant report

Variant	rs73577991
Chromosome Location	chr6:144030748-144030749
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144027649..144029895-chr6:144030018..144031552,2	MCF-7	breast:
2	chr6:144019071..144021984-chr6:144030527..144032678,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56404863	1.00[ASN][1000 genomes]
rs9496745	0.80[ASN][1000 genomes]
rs9496746	0.80[ASN][1000 genomes]
rs9496749	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886737	chr6:144010570-144033992	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144011600-144053200	Weak transcription	Hela-S3	cervix
2	chr6:144014200-144039800	Weak transcription	Pancreas	Pancrea
3	chr6:144015400-144034600	Weak transcription	Esophagus	oesophagus
4	chr6:144016200-144037200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:144016200-144038000	Weak transcription	NHEK	skin
6	chr6:144016600-144034000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:144016600-144034000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:144017000-144038200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:144017200-144044200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:144017400-144034400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:144017800-144047200	Weak transcription	K562	blood
12	chr6:144018000-144030800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:144018200-144044400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:144020200-144034600	Weak transcription	Spleen	Spleen
15	chr6:144020400-144030800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:144021600-144030800	Weak transcription	Right Ventricle	heart
17	chr6:144021800-144030800	Weak transcription	Left Ventricle	heart
18	chr6:144021800-144034000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:144021800-144037800	Weak transcription	Right Atrium	heart
20	chr6:144022200-144034000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:144022200-144034000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:144022200-144034600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:144022200-144034800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:144022200-144052600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:144022200-144063200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:144022400-144034000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:144022800-144052800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:144022800-144057200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:144022800-144064200	Weak transcription	NH-A	brain
30	chr6:144023000-144034000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:144023000-144034000	Weak transcription	HSMMtube	muscle
32	chr6:144023000-144046200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:144023200-144039400	Weak transcription	HUVEC	blood vessel
34	chr6:144023200-144043800	Weak transcription	Fetal Kidney	kidney
35	chr6:144023200-144045800	Weak transcription	NHLF	lung
36	chr6:144023400-144030800	Weak transcription	Aorta	Aorta
37	chr6:144023400-144039400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:144023600-144030800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:144023800-144048600	Weak transcription	Psoas Muscle	Psoas
40	chr6:144023800-144063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:144024600-144031000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:144024600-144034800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:144024600-144052800	Weak transcription	Osteobl	bone
44	chr6:144025400-144035000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:144025400-144039400	Weak transcription	Ovary	ovary
46	chr6:144025400-144048000	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:144026800-144031400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:144027000-144034600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:144027200-144034000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:144027200-144037800	Weak transcription	HepG2	liver

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