Variant report

Variant	rs73578172
Chromosome Location	chr11:100785177-100785178
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73580115	1.00[AMR][1000 genomes]
rs73580117	1.00[AMR][1000 genomes]
rs73580131	1.00[AMR][1000 genomes]
rs7946168	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100758400-100798400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:100758600-100795200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:100758800-100789400	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:100758800-100791200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:100761600-100788800	Weak transcription	Fetal Heart	heart
6	chr11:100770400-100789800	Weak transcription	Fetal Stomach	stomach
7	chr11:100772000-100831400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:100773800-100789600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:100773800-100789800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:100773800-100809800	Weak transcription	Left Ventricle	heart
11	chr11:100774400-100785200	Weak transcription	Liver	Liver
12	chr11:100774800-100812800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:100776000-100794000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:100776800-100789600	Weak transcription	Gastric	stomach
15	chr11:100777400-100794200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:100779200-100789400	Weak transcription	NH-A	brain
17	chr11:100779600-100786200	Weak transcription	Placenta	Placenta
18	chr11:100779800-100790000	Weak transcription	Psoas Muscle	Psoas
19	chr11:100779800-100794200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:100780400-100792600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:100782000-100789600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:100783000-100790000	Weak transcription	Ovary	ovary
23	chr11:100783200-100788800	Weak transcription	Fetal Kidney	kidney
24	chr11:100783400-100785200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:100783600-100789600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:100783800-100789800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:100784000-100789800	Weak transcription	Small Intestine	intestine
28	chr11:100784000-100808800	Weak transcription	Primary B cells from cord blood	blood
29	chr11:100784600-100785400	Strong transcription	Fetal Intestine Small	intestine

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