Variant report

Variant	rs73578279
Chromosome Location	chr11:120188799-120188800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2276111	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120185400-120189000	Enhancers	Fetal Heart	heart
2	chr11:120186800-120188800	Enhancers	Right Atrium	heart
3	chr11:120187200-120188800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:120187200-120188800	Enhancers	Colonic Mucosa	Colon
5	chr11:120187200-120188800	Enhancers	Left Ventricle	heart
6	chr11:120187200-120189600	Enhancers	Fetal Intestine Small	intestine
7	chr11:120187200-120189800	Enhancers	Fetal Intestine Large	intestine
8	chr11:120188200-120188800	Enhancers	Stomach Smooth Muscle	stomach
9	chr11:120188200-120189600	Enhancers	Placenta	Placenta
10	chr11:120188200-120190000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:120188200-120195400	Weak transcription	Pancreas	Pancrea
12	chr11:120188200-120195600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:120188400-120189200	Enhancers	Psoas Muscle	Psoas
14	chr11:120188400-120195400	Weak transcription	NHEK	skin
15	chr11:120188400-120195600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:120188600-120195400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:120188600-120195600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:120188600-120195800	Weak transcription	Esophagus	oesophagus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links