Variant report

Variant	rs73578402
Chromosome Location	chr6:147487732-147487733
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:147486603..147490709-chr6:147522349..147526252,7	K562	blood:
2	chr6:147487607..147490192-chr6:147607586..147610470,2	K562	blood:
3	chr6:147477631..147490692-chr6:147521132..147530003,24	K562	blood:
4	chr6:147487237..147491154-chr6:147494860..147497509,4	K562	blood:
5	chr6:147486719..147489224-chr6:147498505..147500216,2	K562	blood:
6	chr6:147487150..147489403-chr6:147490355..147493952,4	K562	blood:
7	chr6:147485019..147487788-chr6:147631094..147633073,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164506	Chromatin interaction
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56869772	0.83[AFR][1000 genomes]
rs58015539	1.00[AFR][1000 genomes]
rs59394954	0.83[AFR][1000 genomes]
rs60373428	0.83[AFR][1000 genomes]
rs61415097	0.83[AFR][1000 genomes]
rs73574455	0.83[AFR][1000 genomes]
rs73574477	0.83[AFR][1000 genomes]
rs73584126	0.83[AFR][1000 genomes]
rs73584143	1.00[AFR][1000 genomes]
rs73584183	1.00[AFR][1000 genomes]
rs73586105	1.00[AFR][1000 genomes]
rs73588105	1.00[AFR][1000 genomes]
rs73588123	0.83[AFR][1000 genomes]
rs73590062	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147483000-147491000	Weak transcription	NH-A	brain
2	chr6:147483800-147487800	Weak transcription	NHEK	skin
3	chr6:147485400-147488800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:147486000-147491200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:147486600-147488400	Enhancers	HUVEC	blood vessel
6	chr6:147486800-147487800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:147486800-147488000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:147486800-147488000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:147486800-147488800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:147486800-147489000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:147486800-147492600	Enhancers	NHDF-Ad	bronchial
12	chr6:147487200-147493000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:147487400-147487800	Enhancers	K562	blood
14	chr6:147487400-147488000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:147487400-147488000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:147487400-147488600	Enhancers	HSMM	muscle
17	chr6:147487600-147487800	Enhancers	Brain Anterior Caudate	brain
18	chr6:147487600-147488000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:147487600-147488000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr6:147487600-147488000	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr6:147487600-147488200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:147487600-147488200	Enhancers	HMEC	breast
23	chr6:147487600-147488400	Enhancers	Brain Angular Gyrus	brain
24	chr6:147487600-147488600	Enhancers	Osteobl	bone
25	chr6:147487600-147489000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:147487600-147489000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:147487600-147489400	Enhancers	NHLF	lung

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