Variant report

Variant	rs73578609
Chromosome Location	chr10:4024880-4024881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11252257	0.93[EUR][1000 genomes]
rs12268701	0.93[EUR][1000 genomes]
rs73584430	0.90[EUR][1000 genomes]
rs73584445	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4017400-4025200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:4017400-4025400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:4017800-4025200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr10:4018200-4025200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr10:4020200-4025200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr10:4020200-4032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:4021200-4027200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:4022200-4036400	Weak transcription	Right Atrium	heart
9	chr10:4022600-4025000	Weak transcription	Fetal Thymus	thymus
10	chr10:4022600-4028200	Weak transcription	Spleen	Spleen
11	chr10:4022800-4029400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:4023800-4025000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:4024200-4025200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:4024200-4025400	Enhancers	Dnd41	blood
15	chr10:4024200-4028200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:4024400-4025000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:4024400-4025000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr10:4024800-4025200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr10:4024800-4025200	Enhancers	Primary T killer memory cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links