Variant report

Variant	rs73579024
Chromosome Location	chr6:146682782-146682783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs362823	0.82[EUR][1000 genomes]
rs362908	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs362918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73579029	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146679600-146683600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:146679800-146682800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:146680200-146683000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:146680600-146694400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:146681600-146683400	Enhancers	Fetal Heart	heart
6	chr6:146681600-146683600	Enhancers	HUVEC	blood vessel
7	chr6:146682000-146682800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:146682000-146682800	Enhancers	Fetal Brain Female	brain
9	chr6:146682000-146683400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:146682000-146683400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:146682000-146683400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:146682000-146683400	Enhancers	Hela-S3	cervix
13	chr6:146682000-146683600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:146682200-146683000	Enhancers	NHDF-Ad	bronchial
15	chr6:146682200-146683400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:146682200-146683400	Enhancers	Osteobl	bone
17	chr6:146682600-146683200	Enhancers	HMEC	breast
18	chr6:146682600-146683200	Enhancers	NHEK	skin
19	chr6:146682600-146683400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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