Variant report

Variant	rs73579591
Chromosome Location	chr6:141884333-141884334
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139688968..139691016-chr6:141882532..141884352,2	MCF-7	breast:
2	chr6:139692928..139695826-chr6:141882361..141885438,4	MCF-7	breast:
3	chr6:141630179..141631093-chr6:141883723..141884605,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12194098	0.93[AFR][1000 genomes]
rs6899865	0.86[AFR][1000 genomes]
rs6909719	1.00[AFR][1000 genomes]
rs6911153	1.00[AFR][1000 genomes]
rs73577598	0.86[AFR][1000 genomes]
rs73577602	0.86[AFR][1000 genomes]
rs73579507	0.86[AFR][1000 genomes]
rs73579513	0.93[AFR][1000 genomes]
rs73579546	1.00[AFR][1000 genomes]
rs73579548	0.82[AFR][1000 genomes]
rs73579560	1.00[AFR][1000 genomes]
rs73579568	1.00[AFR][1000 genomes]
rs73579573	1.00[AFR][1000 genomes]
rs73579575	1.00[AFR][1000 genomes]
rs7759502	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141881600-141884800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:141883000-141884800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:141883000-141884800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:141883000-141885000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:141883000-141885400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:141883200-141884400	Active TSS	Aorta	Aorta
7	chr6:141883200-141884400	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr6:141883200-141884600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:141883200-141884600	Enhancers	Dnd41	blood
10	chr6:141883200-141884800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:141883200-141884800	Active TSS	Brain Substantia Nigra	brain
12	chr6:141883200-141885000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:141883200-141885000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:141883200-141885000	Active TSS	Brain Cingulate Gyrus	brain
15	chr6:141883200-141885000	Active TSS	Right Atrium	heart
16	chr6:141883200-141885800	Enhancers	Fetal Heart	heart
17	chr6:141883400-141884400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:141883400-141884400	Active TSS	Stomach Smooth Muscle	stomach
19	chr6:141883400-141884600	Active TSS	Primary T killer memory cells from peripheral blood	blood
20	chr6:141883400-141884600	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr6:141883400-141884800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:141883400-141884800	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr6:141883400-141885000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:141883400-141885000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:141883400-141885000	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr6:141883400-141885000	Enhancers	HSMM	muscle
27	chr6:141883600-141884600	Enhancers	Hela-S3	cervix
28	chr6:141883600-141885000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:141883600-141885000	Active TSS	Brain Anterior Caudate	brain
30	chr6:141883600-141885000	Active TSS	Brain Hippocampus Middle	brain
31	chr6:141883600-141885000	Enhancers	Fetal Brain Male	brain
32	chr6:141883600-141885000	Enhancers	HSMMtube	muscle
33	chr6:141883800-141884400	Enhancers	Brain Germinal Matrix	brain
34	chr6:141883800-141884400	Flanking Active TSS	Colon Smooth Muscle	Colon
35	chr6:141883800-141884400	Active TSS	Osteobl	bone
36	chr6:141883800-141884600	Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr6:141883800-141884800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:141883800-141885000	Active TSS	Psoas Muscle	Psoas
39	chr6:141883800-141885000	Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr6:141884000-141884400	Enhancers	Muscle Satellite Cultured Cells	--
41	chr6:141884000-141884400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:141884000-141884400	Enhancers	A549	lung
43	chr6:141884000-141884400	Weak transcription	NHLF	lung
44	chr6:141884000-141884600	Enhancers	Liver	Liver
45	chr6:141884000-141884800	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr6:141884000-141884800	Active TSS	Fetal Brain Female	brain
47	chr6:141884000-141884800	Weak transcription	Placenta	Placenta
48	chr6:141884000-141884800	Enhancers	HUVEC	blood vessel
49	chr6:141884000-141885000	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr6:141884000-141885000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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