Variant report

Variant	rs73579710
Chromosome Location	chr11:101040392-101040393
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12287203	1.00[EUR][1000 genomes]
rs17096381	1.00[EUR][1000 genomes]
rs57066252	1.00[EUR][1000 genomes]
rs57575538	1.00[EUR][1000 genomes]
rs59237411	1.00[EUR][1000 genomes]
rs59355784	1.00[AMR][1000 genomes]
rs60271987	1.00[EUR][1000 genomes]
rs60652929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61341674	1.00[EUR][1000 genomes]
rs7115776	1.00[EUR][1000 genomes]
rs7128170	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7934807	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101030600-101048200	Weak transcription	Fetal Lung	lung
2	chr11:101037400-101046400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:101037400-101080800	Weak transcription	Left Ventricle	heart
4	chr11:101038200-101050600	Weak transcription	Right Ventricle	heart
5	chr11:101039000-101040600	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr11:101039400-101041000	Enhancers	Rectal Smooth Muscle	rectum
7	chr11:101039600-101041200	Enhancers	Colon Smooth Muscle	Colon
8	chr11:101040000-101046200	Weak transcription	Aorta	Aorta
9	chr11:101040000-101046200	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links