Variant report

Variant	rs73582468
Chromosome Location	chr6:143072771-143072772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143072743..143074672-chr6:143075733..143079095,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73582443	0.86[AFR][1000 genomes]
rs73582445	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143049800-143073200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143054200-143072800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:143059400-143072800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:143059400-143080600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:143059600-143074200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:143062200-143074200	Weak transcription	NHEK	skin
7	chr6:143062400-143073600	Weak transcription	NHDF-Ad	bronchial
8	chr6:143062400-143074200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:143062600-143074200	Weak transcription	HSMM	muscle
10	chr6:143064000-143074000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:143066000-143073000	Weak transcription	HSMMtube	muscle
12	chr6:143066200-143074200	Weak transcription	HMEC	breast
13	chr6:143066200-143079000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:143066800-143074000	Weak transcription	Adipose Nuclei	Adipose
15	chr6:143066800-143074200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:143067600-143074200	Weak transcription	Brain Angular Gyrus	brain
17	chr6:143067600-143080600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:143067800-143074000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:143067800-143074200	Weak transcription	Aorta	Aorta
20	chr6:143067800-143074200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:143068000-143072800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:143068000-143074200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:143068000-143074200	Weak transcription	Brain Anterior Caudate	brain
24	chr6:143068000-143075000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:143068200-143073800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:143068200-143074200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:143068200-143074200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr6:143068200-143074200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:143068200-143074200	Weak transcription	Thymus	Thymus
30	chr6:143068200-143077400	Weak transcription	Fetal Lung	lung
31	chr6:143068200-143079600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:143068400-143072800	Weak transcription	Fetal Thymus	thymus
33	chr6:143068400-143074000	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr6:143070600-143073800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr6:143070600-143074200	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:143071000-143072800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:143071000-143073800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:143071200-143072800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:143071200-143072800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:143071200-143072800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr6:143071200-143072800	Weak transcription	Fetal Intestine Large	intestine
42	chr6:143071200-143072800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:143071200-143074200	Weak transcription	Liver	Liver
44	chr6:143071200-143074200	Weak transcription	HepG2	liver
45	chr6:143071200-143074400	Weak transcription	Fetal Stomach	stomach
46	chr6:143071400-143073000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:143071400-143073000	Weak transcription	Left Ventricle	heart
48	chr6:143071600-143073400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:143071600-143074200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:143071600-143074200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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