Variant report

Variant	rs73582516
Chromosome Location	chr6:147546400-147546401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147221999..147224137-chr6:147543696..147547016,3	MCF-7	breast:
2	chr6:147221788..147226460-chr6:147542201..147549451,7	K562	blood:
3	chr6:147544721..147547282-chr6:147606691..147608691,2	K562	blood:
4	chr6:147537757..147539516-chr6:147545815..147547714,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs35159107	1.00[AMR][1000 genomes]
rs56949239	1.00[AMR][1000 genomes]
rs60462938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61271397	1.00[AMR][1000 genomes]
rs73580418	1.00[AMR][1000 genomes]
rs73586336	1.00[AMR][1000 genomes]
rs73787169	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886753	chr6:147526508-147680291	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv470864	chr6:147539165-147709179	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147526000-147572200	Weak transcription	Lung	lung
2	chr6:147527200-147547400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:147527200-147548400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:147527200-147549000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:147527200-147557800	Weak transcription	Fetal Stomach	stomach
6	chr6:147527200-147570000	Weak transcription	Left Ventricle	heart
7	chr6:147527200-147572000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:147527200-147572200	Weak transcription	Esophagus	oesophagus
9	chr6:147527400-147558800	Weak transcription	Primary B cells from cord blood	blood
10	chr6:147527400-147563800	Weak transcription	NH-A	brain
11	chr6:147527400-147566800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:147527400-147576400	Weak transcription	HSMMtube	muscle
13	chr6:147527600-147549200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:147527600-147559600	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:147527800-147586800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:147528200-147551800	Weak transcription	HUVEC	blood vessel
17	chr6:147528800-147549000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:147528800-147565800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:147528800-147572000	Weak transcription	A549	lung
20	chr6:147529000-147572200	Weak transcription	Aorta	Aorta
21	chr6:147529400-147571800	Weak transcription	Fetal Brain Male	brain
22	chr6:147529600-147549000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:147529800-147549000	Weak transcription	HMEC	breast
24	chr6:147530000-147572000	Weak transcription	NHEK	skin
25	chr6:147530200-147548600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr6:147531400-147548800	Weak transcription	Hela-S3	cervix
27	chr6:147533200-147572200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:147534000-147550800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:147534000-147572200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr6:147535800-147557600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:147537600-147572200	Weak transcription	Ovary	ovary
32	chr6:147537800-147571600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr6:147538200-147572200	Weak transcription	Spleen	Spleen
34	chr6:147538400-147572200	Weak transcription	Fetal Lung	lung
35	chr6:147538600-147549200	Weak transcription	Brain Germinal Matrix	brain
36	chr6:147538800-147572200	Weak transcription	Placenta	Placenta
37	chr6:147540200-147549000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:147540200-147559200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr6:147540200-147569600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:147540200-147572000	Weak transcription	Thymus	Thymus
41	chr6:147540400-147546600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:147540800-147561800	Weak transcription	Fetal Kidney	kidney
43	chr6:147542400-147590800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr6:147542600-147549600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr6:147543800-147546800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:147543800-147546800	Weak transcription	Fetal Intestine Large	intestine
47	chr6:147543800-147548400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:147543800-147548400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr6:147543800-147548600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:147543800-147548600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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