Variant report

Variant	rs73582722
Chromosome Location	chr20:1744019-1744020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11905288	0.82[AFR][1000 genomes]
rs11905607	0.89[AFR][1000 genomes]
rs11906199	0.89[AFR][1000 genomes]
rs11906607	0.89[AFR][1000 genomes]
rs11907220	0.89[AFR][1000 genomes]
rs11907659	0.89[AFR][1000 genomes]
rs11907976	0.89[AFR][1000 genomes]
rs11908091	0.89[AFR][1000 genomes]
rs11908304	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57731168	0.89[AFR][1000 genomes]
rs58128200	0.89[AFR][1000 genomes]
rs73576977	0.89[AFR][1000 genomes]
rs73580905	0.89[AFR][1000 genomes]
rs73580908	0.89[AFR][1000 genomes]
rs73580910	0.82[AFR][1000 genomes]
rs73580913	0.89[AFR][1000 genomes]
rs73580914	0.89[AFR][1000 genomes]
rs73580917	0.89[AFR][1000 genomes]
rs73580920	0.89[AFR][1000 genomes]
rs73580924	0.89[AFR][1000 genomes]
rs73580928	0.89[AFR][1000 genomes]
rs73580933	0.89[AFR][1000 genomes]
rs73580936	0.89[AFR][1000 genomes]
rs73580937	0.89[AFR][1000 genomes]
rs73580938	0.89[AFR][1000 genomes]
rs73580942	0.89[AFR][1000 genomes]
rs73580946	0.89[AFR][1000 genomes]
rs73582710	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582715	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912596	chr20:1486637-1877150	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1057036	chr20:1493425-1869281	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv912597	chr20:1500506-1877150	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv833894	chr20:1519433-1753366	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv531473	chr20:1532476-1864506	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1739200-1745000	Weak transcription	Brain Anterior Caudate	brain
2	chr20:1739200-1747600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr20:1739400-1745000	Weak transcription	Brain Angular Gyrus	brain
4	chr20:1739400-1747600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr20:1739600-1744800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr20:1739600-1745000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr20:1739600-1745400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr20:1740200-1745000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr20:1740800-1745000	Weak transcription	Fetal Intestine Large	intestine
10	chr20:1741000-1757200	Weak transcription	Fetal Intestine Small	intestine
11	chr20:1742000-1745000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr20:1742200-1745000	Weak transcription	Liver	Liver
13	chr20:1742200-1745000	Weak transcription	A549	lung
14	chr20:1742400-1744800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr20:1742400-1744800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr20:1742400-1744800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr20:1742400-1744800	Weak transcription	Hela-S3	cervix
18	chr20:1742400-1744800	Weak transcription	NH-A	brain
19	chr20:1742400-1755800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr20:1742400-1755800	Weak transcription	Osteobl	bone
21	chr20:1742400-1756000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr20:1742400-1756000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr20:1742400-1757000	Weak transcription	HSMMtube	muscle
24	chr20:1742600-1744800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr20:1742600-1744800	Weak transcription	NHEK	skin
26	chr20:1742600-1745000	Weak transcription	HMEC	breast
27	chr20:1742600-1745000	Weak transcription	NHDF-Ad	bronchial
28	chr20:1742800-1744600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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