Variant report

Variant	rs7358392
Chromosome Location	chr11:9301445-9301446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9301124..9302676-chr11:9383482..9385931,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10743104	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10770002	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10770003	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10770004	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10770006	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10770008	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10770009	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10770010	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10770013	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10840196	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840199	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10840200	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10840204	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840205	0.83[ASN][1000 genomes]
rs10840207	0.82[ASN][1000 genomes]
rs11042245	0.81[EUR][1000 genomes]
rs11042252	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11042256	0.91[ASN][1000 genomes]
rs11042262	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11042264	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11042265	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11042266	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042267	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11042269	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11042274	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11500788	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11602591	0.91[ASN][1000 genomes]
rs12574882	0.83[ASN][1000 genomes]
rs12796666	0.86[ASN][1000 genomes]
rs12801814	0.89[ASN][1000 genomes]
rs2133216	0.88[ASN][1000 genomes]
rs34446443	0.90[ASN][1000 genomes]
rs34494849	0.85[ASN][1000 genomes]
rs34716494	0.87[ASN][1000 genomes]
rs35381016	0.88[ASN][1000 genomes]
rs35686957	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4325312	0.83[ASN][1000 genomes]
rs4343026	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4369406	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4447178	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4570580	0.81[ASN][1000 genomes]
rs4601779	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4641476	0.81[ASN][1000 genomes]
rs5014247	0.90[ASN][1000 genomes]
rs61875672	0.89[ASN][1000 genomes]
rs61875673	0.91[ASN][1000 genomes]
rs61877916	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6486231	0.80[EUR][1000 genomes]
rs7101432	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7121013	0.83[ASN][1000 genomes]
rs7123342	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7124178	0.84[ASN][1000 genomes]
rs71476818	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7358313	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7952508	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
7	nsv515891	chr11:9275898-9334961	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv7669	chr11:9290376-9335028	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9287400-9301600	Weak transcription	Esophagus	oesophagus
2	chr11:9287400-9302000	Weak transcription	Spleen	Spleen
3	chr11:9287400-9319600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:9287400-9332600	Weak transcription	HMEC	breast
5	chr11:9287400-9333000	Weak transcription	Gastric	stomach
6	chr11:9287600-9301600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:9287600-9301800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:9287600-9302000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:9287600-9302000	Weak transcription	HSMM	muscle
10	chr11:9287600-9302000	Weak transcription	Osteobl	bone
11	chr11:9287600-9304800	Weak transcription	NHEK	skin
12	chr11:9287600-9319200	Weak transcription	NHLF	lung
13	chr11:9287800-9301600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:9287800-9301600	Weak transcription	Fetal Intestine Large	intestine
15	chr11:9287800-9301800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:9287800-9301800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:9287800-9302400	Weak transcription	Brain Germinal Matrix	brain
18	chr11:9287800-9305200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:9287800-9312200	Weak transcription	K562	blood
20	chr11:9287800-9328400	Weak transcription	A549	lung
21	chr11:9287800-9333800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:9288000-9301800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:9288000-9320400	Weak transcription	Fetal Kidney	kidney
24	chr11:9288200-9321200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:9288600-9323200	Weak transcription	Pancreas	Pancrea
26	chr11:9289600-9311600	Weak transcription	HepG2	liver
27	chr11:9289600-9314400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:9289800-9302000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:9290000-9301600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr11:9290000-9301600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:9290000-9301600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:9290000-9301800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:9290000-9302000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr11:9290000-9318000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:9291400-9301600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:9291600-9302200	Weak transcription	Hela-S3	cervix
37	chr11:9291600-9322600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:9293800-9311000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr11:9295000-9301600	Weak transcription	GM12878-XiMat	blood
40	chr11:9295400-9301600	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:9295800-9301800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr11:9296000-9307600	Weak transcription	Primary B cells from cord blood	blood
43	chr11:9296200-9303000	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr11:9296400-9301600	Weak transcription	Liver	Liver
45	chr11:9296600-9301600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:9296600-9301600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:9296600-9301800	Weak transcription	Fetal Brain Male	brain
48	chr11:9296600-9302000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr11:9296600-9302000	Weak transcription	Brain Anterior Caudate	brain
50	chr11:9296600-9302000	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links